Is the order of treatments fixed? For instance, if a patient starts on A and is negative, is the next treatment always B? Does the same apply if B is negative, would the next treatment be C? If this is the case, you have a repeated measures design where you likely have structural zeroes (for instance, patient 4, which started with B, so that there is structural zero for that patient for treatment A). If this all describes what you have, look at the first few examples in the PROC GEE documentation, and see whether the alternating logistic regression method might work for you.
SteveDenham
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