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Niugg2010
Obsidian | Level 7

I have gene sequence file with the format is ".fastq".  How can I impout fastq file in to sas for data dealing? Thanks.

1 ACCEPTED SOLUTION

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Reeza
Super User

It looks like it's a text file,so you can use standard text processing. That being said, it also looks like a complex file.

 

If you need assistance, its best to post a sample of the file, attach it as a .txt file or post in the message.

 

 

Niugg2010
Obsidian | Level 7

Thanks I will try. Actually I used Enterprise Guide to import, and then copy the code to sas to get data set.

rogerjdeangelis
Barite | Level 11

R is integrated with SAS IML so you should be able to use

 

http://svitsrv25.epfl.ch/R-doc/library/ShortRead/html/readFastq.html

Niugg2010
Obsidian | Level 7

Thanks.

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