Great write-up — love the blend of wet-lab reality and hard lessons in data engineering. Turning a messy mix of plate reader Excel files into a single, validated dataset for USDA submission is real craftsmanship. Your approach — standardize input with a template, enforce “raw only” acceptance, and iterate the SAS ETL for robustness — is exactly what a regulated lab needs. If I may, a few suggestions that helped me in similar projects: modularize reusable pieces into macros, add automated validation/QA steps that fail loudly, document the mapping rules inside the code, use version control for templates and code, and consider server scheduling for repeatable batch runs. Happy to review a snippet of your SAS code or sketch macros for plate mapping if you want — this is the kind of problem I love. Quick practical tips (bite-size) Macros for plate layout — create one macro to expand A1–H12 into well IDs and attach dilution/lot metadata; reuse across plate sizes. Template validation — a small SAS check step that rejects files missing required headers, or with manual edits (e.g., non-numeric OD). Unit tests / QA — scripted tests: known control wells → expected OD ranges; flag plates that fail. Logging & audit trail — write a processing log with file hash, timestamp, user, and processing outcome for Data Integrity. Version control & deployment — keep templates and code in git; deploy to the SAS server with scheduled jobs (not manual runs). Modular outputs — generate both the raw-mapped dataset and a “report” dataset the biostatistician expects so one run serves both needs.
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