Hello,   I am looking for help with troubleshooting these warnings that I am getting when I run proc mi FCS. I am analyzing data from a randomized clinical trial. Assessment are at 6 week interval, at each interval there are either binary flags for new diagnosis, or medication use, and also continuous variables and ordinal variables. Note that the same variables are measured at each 6 week interval.    I have been getting the following warning "An effect for the variable X is a linear combination of other effects. The coefficient of the effect will be set to zero in the imputation". This appears for almost all variables in the imputation model. I have used proc corr to check correlations of continuous variables and none are =1. Next I took each variable out one-by-one to see which one generated the error. I have been identified 3 variables (total 6 measured at different timepoints) that generate the warning. However, I am not sure how they might have a linear combination. These variables are simply just binary flags for  the presence of specific diagnosis at weeks 6 and 12. Note that if I put W6 only or w12 only, then there is no warning. The 2X2 table is below.   DBD_W6 DBD_W12 N . . 11 0 . 80 0 0 351 1 . 4 1 1 17   ADHD_W6 ADHD_W12 N . . 11 0 . 74 0 0 330 1 . 10 1 1 38   SEVERE_W6 SEVERE_W12 N . . 11 0 . 84 0 0 365 0 1 2 1 1 1   Another warning is "The maximum likelihood estimates for the FCS method logistic model for variable X in an iteration process may not exist. The resulting posterior predictive distribution of the parameters used in the imputation process is based on the maximum likelihood estimates in the last maximum likelihood iteration. the likelihood=augment option can be used to derive the last maximum likelihood estimates by using an augmented dataset" This is only generated for one variable. This is an ordinal variable (likert 7 point scale) which I have specified as FCS LOGISTIC (X/order=internal). What does this warning mean? and how should I fix it? I am not sure what it means to use a likelihood=augment option.     ... View more