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kmardinian
Quartz | Level 8

Hi, I am working out of SAS Studio and have two different excel datasets I created two KM Survival curves for. For presentation purposes, I wanted to know whether there was a way to have both curves show up in one image so it's easier to compare the two. 

 

Here is the code I have been using so far:

 

PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/ConcordantKRAS.xlsx"
OUT=ConKRAS
DBMS=XLSX
REPLACE;

Data Survival;
Set ConKRAS (Keep= status SurvivalTime);
run;

Proc Freq;
Tables SurvivalTime STATUS ;
run;

Proc Lifetest Data=Survival Method=KM Plots=(s) Censoredsymbol= '|';
Time SurvivalTime*STATUS (1);
run;

PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/DiscordantKRAS.xlsx"
OUT=DisKRAS
DBMS=XLSX
REPLACE;

Data Survival1;
Set DisKRAS (Keep= status SurvivalTime);
run;

Proc Freq;
Tables SurvivalTime STATUS ;
run;

Proc Lifetest Data=Survival Method=KM Plots=(s) Censoredsymbol= '|';
Time SurvivalTime*STATUS (1);
run;

 

 

Any help is much appreciated!

1 ACCEPTED SOLUTION

Accepted Solutions
Reeza
Super User

Read in both data sets - with different names. 

 

Append them using a data step and add a variable that indicates the source data set.

 

Use that as the STRATA variable - AND CHECK THAT THEY'RE the same. I think the calculations are independent with strata's but I can't recall so you should definitely verify that. Untested/unverified.

 

PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/ConcordantKRAS.xlsx"
OUT=ConKRAS
DBMS=XLSX
REPLACE;

PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/DiscordantKRAS.xlsx"
OUT=DisKRAS
DBMS=XLSX
REPLACE;
run;

Data Survival;
Set ConKRAS (Keep= status SurvivalTime) diskRAS(keep=status survivalTIme) indsname=source;
dsn_name = source;
run;

Proc Lifetest Data=Survival Method=KM Plots=(s) Censoredsymbol= '|';
Time SurvivalTime*STATUS (1);
strata dsn_name;
run;

View solution in original post

4 REPLIES 4
Reeza
Super User

Read in both data sets - with different names. 

 

Append them using a data step and add a variable that indicates the source data set.

 

Use that as the STRATA variable - AND CHECK THAT THEY'RE the same. I think the calculations are independent with strata's but I can't recall so you should definitely verify that. Untested/unverified.

 

PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/ConcordantKRAS.xlsx"
OUT=ConKRAS
DBMS=XLSX
REPLACE;

PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/DiscordantKRAS.xlsx"
OUT=DisKRAS
DBMS=XLSX
REPLACE;
run;

Data Survival;
Set ConKRAS (Keep= status SurvivalTime) diskRAS(keep=status survivalTIme) indsname=source;
dsn_name = source;
run;

Proc Lifetest Data=Survival Method=KM Plots=(s) Censoredsymbol= '|';
Time SurvivalTime*STATUS (1);
strata dsn_name;
run;

kmardinian
Quartz | Level 8

Thank you so much, that definitely makes sense! But for some reason when I run this code, SAS doesn't recognize my variables in the keep statement

 

LOG:

 
1 OPTIONS NONOTES NOSTIMER NOSOURCE NOSYNTAXCHECK;
61
62 PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/ConcordantKRAS.xlsx"
63 OUT=ConKRAS
64 DBMS=XLSX
65 REPLACE;
66
 
NOTE: The import data set has 380 observations and 26 variables.
NOTE: WORK.CONKRAS data set was successfully created.
NOTE: PROCEDURE IMPORT used (Total process time):
real time 0.15 seconds
cpu time 0.13 seconds
 
67 PROC IMPORT DATAFILE="/folders/myshortcuts/SAS_filesUSB/DiscordantKRAS.xlsx"
 
68 OUT=DisKRAS
69 DBMS=XLSX
70 REPLACE;
71 run;
 
NOTE: The import data set has 528 observations and 26 variables.
NOTE: WORK.DISKRAS data set was successfully created.
NOTE: PROCEDURE IMPORT used (Total process time):
real time 0.18 seconds
cpu time 0.18 seconds
 
 
72
73 Data Survival;
74 Set ConKRAS (Keep= status SurvivalTime) diskRAS(keep=status survivalTIme) indsname=source;
ERROR: The variable status in the DROP, KEEP, or RENAME list has never been referenced.
75 dsn_name = source;
76 run;
 
NOTE: The SAS System stopped processing this step because of errors.
WARNING: The data set WORK.SURVIVAL may be incomplete. When this step was stopped there were 0 observations and 3 variables.
WARNING: Data set WORK.SURVIVAL was not replaced because this step was stopped.
NOTE: DATA statement used (Total process time):
real time 0.00 seconds
cpu time 0.00 seconds
 
 
77
78 Proc Lifetest Data=Survival Method=KM Plots=(s) Censoredsymbol= '|';
79 Time SurvivalTime*STATUS (1);
80 strata dsn_name;
ERROR: Variable DSN_NAME not found.
81 run;
 
NOTE: The SAS System stopped processing this step because of errors.
NOTE: PROCEDURE LIFETEST used (Total process time):
real time 0.00 seconds
cpu time 0.00 seconds
 
82
83 OPTIONS NONOTES NOSTIMER NOSOURCE NOSYNTAXCHECK;
96
 
Do you know why that is? Thank you!
Reeza
Super User
72
73 Data Survival;
74 Set ConKRAS (Keep= status SurvivalTime) diskRAS(keep=status survivalTIme) indsname=source;
ERROR: The variable status in the DROP, KEEP, or RENAME list has never been referenced.
75 dsn_name = source;
76 run;
 
NOTE: The SAS System stopped processing this step because of errors.
WARNING: The data set WORK.SURVIVAL may be incomplete. When this step was stopped there were 0 observations and 3 variables.
WARNING: Data set WORK.SURVIVAL was not replaced because this step was stopped.
NOTE: DATA statement used (Total process time):
real time 0.00 seconds
cpu time 0.00 seconds
 
I used the code you provided, which indicated the variable names was 'status' in both data sets. If your code ran before it should run now, but this is a variable name issue. You can verify the variable names and ensure that you have the correct names and variables to combine the data - they need to be the same type to be able to combine it. 
 
 
kmardinian
Quartz | Level 8

That was an oversight on my part, sorry! It is working now, thank you so much!

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