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Aryyyan
Obsidian | Level 7 Aryyyan
Obsidian | Level 7
Go to Solution

Find 3 consecutive "None" values after last not-None value. Flag that value and flag value above it

Posted 01-25-2022 04:42 PM (1321 views)

I need help to calculate these 2 flags value.

 

Flag1 = first day of 3 consecutive days with observed severity “None”. A “Missing” grade in the middle of “None” grades disrupts the sequence and the count starts over at the next “None”. If never any symptoms on-study, or never 3 consecutive days with “None” after a grade > 0, set to 998.

 

Flag2 = If a symptom was reported with grade > “None”, set to last day a symptom was reported before 3 consecutive “None” days. If no symptom before end of diary, set to "No value".

 

SUBJECTcovdaySYCDSYSEVFlag1Flag2
7153079780ABDNone  
7153079781ABDNone  
7153079782ABDNone  
7153079783ABDMild Y
7153079784ABDNoneY 
7153079785ABDNone  
7153079786ABDNone  
7153079787ABDNone  
7153079788ABDNone  
7153079789ABDNone  
7153079780ANOSMIANone  
7153079781ANOSMIANone  
7153079782ANOSMIANone  
7153079783ANOSMIANone  
7153079784ANOSMIAMild Y
7153079785ANOSMIANoneY 
7153079786ANOSMIANone  
7153079787ANOSMIANone  
7153079788ANOSMIANone  
7153079789ANOSMIANone  
7153079780SOBNone  
7153079781SOBNone  
7153079782SOBNone  
7153079783SOBNone  
7153079784SOBNone  
7153079785SOBNone  
7153079786SOBNone  
7153079787SOBNone  
7153079788SOBNone  
7153079789SOBNone  
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1 ACCEPTED SOLUTION

Accepted Solutions
Ksharp
Super User Ksharp
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-28-2022 07:26 AM (1167 views)  |   In reply to Aryyyan

OK . You want this ?

 

 

data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
    subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $4.
    flag1            : $1.
    flag2            : $1.;
  datalines4;
715307978|0|ABD|None| | 
715307978|1|ABD|None| | 
715307978|2|ABD|None| | 
715307978|3|ABD|Mild| |Y
715307978|4|ABD|None|Y| 
715307978|5|ABD|None| | 
715307978|6|ABD|None| | 
715307978|7|ABD|None| | 
715307978|8|ABD|None| | 
715307978|9|ABD|None| | 
715307978|0|ANOSMIA|None| | 
715307978|1|ANOSMIA|None| | 
715307978|2|ANOSMIA|None| | 
715307978|3|ANOSMIA|None| | 
715307978|4|ANOSMIA|Mild| |Y
715307978|5|ANOSMIA|None|Y| 
715307978|6|ANOSMIA|None| | 
715307978|7|ANOSMIA|None| | 
715307978|8|ANOSMIA|None| | 
715307978|9|ANOSMIA|None| | 
715307978|10|ANOSMIA|Mild| |Y
715307978|11|ANOSMIA|None|Y| 
715307978|12|ANOSMIA|None| | 
715307978|13|ANOSMIA|None| | 
715307978|0|SOB|None| | 
715307978|1|SOB|None| | 
715307978|2|SOB|None| | 
715307978|3|SOB|None| | 
715307978|4|SOB|None| | 
715307978|5|SOB|None| | 
715307978|6|SOB|None| | 
715307978|7|SOB|None| | 
715307978|8|SOB|None| | 
715307978|9|SOB|None| | 
;;;;


data _have;
n=0;
do  until(last.sysev);
 set have;
 by subject sycd sysev  notsorted;
 n+1;
 if last.sycd then last_group=1;
end;
do until(last.sysev);
 set have;
 by  subject sycd sysev notsorted;
 output;
end;
run;


data want;
 merge _have _have(keep=subject sycd sysev n last_group
 rename=(subject=_s sycd=_c sysev=_sev n=_n last_group=_last_group) firstobs=2);
 if subject=lag(subject) and sysev='None' and lag(sysev) ne 'None' and n>2 and last_group then new_flag1='Y';
 if subject=_s and sycd=_c and _sev='None' and sysev ne 'None'  and _n>2 and _last_group  then new_flag2='Y';
drop _: n last_group;
run;

View solution in original post

11 REPLIES 11
Patrick
Opal | Level 21 Patrick
Opal | Level 21

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-25-2022 07:48 PM (1310 views)  |   In reply to Aryyyan

Please provide sample data that covers all the cases you describe. This will help to avoid misunderstandings.

 

Flag1 = first day of 3 consecutive days with observed severity “None”. A “Missing” grade in the middle of “None” grades disrupts the sequence and the count starts over at the next “None”. If never any symptoms on-study, or never 3 consecutive days with “None” after a grade > 0, set to 998.

 

Please also provide sample data as a working SAS data step as done below for the data you already posted.

data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
    subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $4.
    flag1            : $1.
    flag2            : $1.;
  datalines4;
715307978|0|ABD|None| | 
715307978|1|ABD|None| | 
715307978|2|ABD|None| | 
715307978|3|ABD|Mild| |Y
715307978|4|ABD|None|Y| 
715307978|5|ABD|None| | 
715307978|6|ABD|None| | 
715307978|7|ABD|None| | 
715307978|8|ABD|None| | 
715307978|9|ABD|None| | 
715307978|0|ANOSMIA|None| | 
715307978|1|ANOSMIA|None| | 
715307978|2|ANOSMIA|None| | 
715307978|3|ANOSMIA|None| | 
715307978|4|ANOSMIA|Mild| |Y
715307978|5|ANOSMIA|None|Y| 
715307978|6|ANOSMIA|None| | 
715307978|7|ANOSMIA|None| | 
715307978|8|ANOSMIA|None| | 
715307978|9|ANOSMIA|None| | 
715307978|0|SOB|None| | 
715307978|1|SOB|None| | 
715307978|2|SOB|None| | 
715307978|3|SOB|None| | 
715307978|4|SOB|None| | 
715307978|5|SOB|None| | 
715307978|6|SOB|None| | 
715307978|7|SOB|None| | 
715307978|8|SOB|None| | 
715307978|9|SOB|None| | 
;;;;
0 Likes
Reeza
Super User Reeza
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-25-2022 08:17 PM (1304 views)  |   In reply to Aryyyan
Do you always have only 9 days? If so, this may be one of the few cases where a wide format would be easier to work with.
0 Likes
Reeza
Super User Reeza
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-25-2022 08:21 PM (1301 views)  |   In reply to Aryyyan
Also your criteria in the post doesn't match what's in the subject line....which one is it? Assuming subject line as it matches the data more?
0 Likes
Aryyyan
Obsidian | Level 7 Aryyyan
Obsidian | Level 7

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-25-2022 11:10 PM (1279 views)  |   In reply to Aryyyan

Thank you @Patrick and @Reeza.

 

In datset below, I need one observation per subject*symptom where

R_T1 = first day of 3 consecutive days with observed severity “None”. A “Missing” grade in the middle of “None” grades disrupts the sequence and the count starts over at the next “None”. If never any symptoms on-study, or never 3 consecutive days with “None” after a grade > 0, set to 998.

For example below, for sycd ABD, I need covday 15 as R_T1,  for sycd ANOSMIA covday 17, for COUGH covday 17, and for SOB since there is never 3 consecutive none after Severe so I need value 998.

 

R_T0 = If a symptom was reported with grade > “None”, set to last day a symptom was reported in [0, R_T1] before 3 consecutive “None” days. If no symptom before end of diary, set to 998.

For example below, for sycd ABD, I need covday 14 as R_T1,  for sycd ANOSMIA covday 15, for COUGH covday 18, and for SOB since there is never 3 consecutive none after Severe so I need value 998.

 

data have;

  infile datalines4

    dlm='|'

    truncover

    dsd;

  input

  subject          : $9.

    covday           : best32.

    sycd             : $7.

    sysev            : $8.

    sysevn                                            : 1.;

  datalines4;

775575874|0|ABD|None|0

775575874|1|ABD|None|0

775575874|2|ABD|None|0

775575874|3|ABD|None|0

775575874|4|ABD|None|0

775575874|5|ABD|None|0

775575874|6|ABD|None|0

775575874|7|ABD|None|0

775575874|8|ABD|None|0

775575874|9|ABD|None|0

775575874|10|ABD|None|0

775575874|11|ABD|None|0

775575874|12|ABD|None|0

775575874|13|ABD|None|0

775575874|14|ABD|Mild|1

775575874|15|ABD|None|0

775575874|16|ABD|None|0

775575874|17|ABD|None|0

775575874|18|ABD|None|0

775575874|19|ABD|None|0      

775575874|20|ABD|None|0

775575874|0|ANOSMIA|None|0

775575874|1|ANOSMIA|None|0

775575874|2|ANOSMIA|None|0

775575874|3|ANOSMIA|None|0

775575874|4|ANOSMIA|None|0

775575874|5|ANOSMIA|None|0

775575874|6|ANOSMIA|None|0

775575874|7|ANOSMIA| |.

775575874|8|ANOSMIA|None|0

775575874|9|ANOSMIA|None|0

775575874|10|ANOSMIA|None|0

775575874|11|ANOSMIA|None|0

775575874|12|ANOSMIA|None|0

775575874|13|ANOSMIA|None|0

775575874|14|ANOSMIA| |.

775575874|15|ANOSMIA|Mild|1

775575874|16|ANOSMIA| |.

775575874|17|ANOSMIA|None|0

775575874|18|ANOSMIA|None|0

775575874|19|ANOSMIA|None|0

775575874|20|ANOSMIA|None|0

775575874|0|COUGH|None|0

775575874|1|COUGH|None|0

775575874|2|COUGH|None|0

775575874|3|COUGH|None|0

775575874|4|COUGH|None|0

775575874|5|COUGH|None|0

775575874|6|COUGH|None|0

775575874|7|COUGH|None|0

775575874|8|COUGH|None|0

775575874|9|COUGH|Mild|1

775575874|10|COUGH|Mild|1

775575874|11|COUGH|Mild|1

775575874|12|COUGH|Mild|1

775575874|13|COUGH|Mild|1

775575874|14|COUGH| |.

775575874|15|COUGH|Moderate|2

775575874|16|COUGH| |.

775575874|17|COUGH|Severe|3

775575874|18|COUGH|None|0

775575874|19|COUGH|None|0

775575874|20|COUGH|None|0

775575874|0|SOB|None|0

775575874|1|SOB|None|0

775575874|2|SOB|None|0

775575874|3|SOB|None|0

775575874|4|SOB|None|0

775575874|5|SOB|None|0

775575874|6|SOB|None|0

775575874|7|SOB|None|0

775575874|8|SOB|None|0

775575874|9|SOB|None|0

775575874|10|SOB|Mild|1

775575874|11|SOB|None|0

775575874|12|SOB|Mild|1

775575874|13|SOB|Mild|1

775575874|14|SOB| |.

775575874|15|SOB|Moderate|2

775575874|16|SOB| |.

775575874|17|SOB| |.

775575874|18|SOB|Moderate|2

775575874|19|SOB| |.

775575874|20|SOB|Severe|3

;;;;

 data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
  subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $8.
    sysevn			 : 1.;
  datalines4;
775575874|0|ABD|None|0
775575874|1|ABD|None|0
775575874|2|ABD|None|0
775575874|3|ABD|None|0
775575874|4|ABD|None|0
775575874|5|ABD|None|0
775575874|6|ABD|None|0
775575874|7|ABD|None|0
775575874|8|ABD|None|0
775575874|9|ABD|None|0
775575874|10|ABD|None|0
775575874|11|ABD|None|0
775575874|12|ABD|None|0
775575874|13|ABD|None|0
775575874|14|ABD|Mild|1
775575874|15|ABD|None|0
775575874|16|ABD|None|0
775575874|17|ABD|None|0
775575874|18|ABD|None|0
775575874|19|ABD|None|0	
775575874|20|ABD|None|0
775575874|0|ANOSMIA|None|0
775575874|1|ANOSMIA|None|0
775575874|2|ANOSMIA|None|0
775575874|3|ANOSMIA|None|0
775575874|4|ANOSMIA|None|0
775575874|5|ANOSMIA|None|0
775575874|6|ANOSMIA|None|0
775575874|7|ANOSMIA| |.
775575874|8|ANOSMIA|None|0
775575874|9|ANOSMIA|None|0
775575874|10|ANOSMIA|None|0
775575874|11|ANOSMIA|None|0
775575874|12|ANOSMIA|None|0
775575874|13|ANOSMIA|None|0
775575874|14|ANOSMIA| |.
775575874|15|ANOSMIA|Mild|1
775575874|16|ANOSMIA| |.
775575874|17|ANOSMIA|None|0
775575874|18|ANOSMIA|None|0
775575874|19|ANOSMIA|None|0
775575874|20|ANOSMIA|None|0
775575874|0|COUGH|None|0
775575874|1|COUGH|None|0
775575874|2|COUGH|None|0
775575874|3|COUGH|None|0
775575874|4|COUGH|None|0
775575874|5|COUGH|None|0
775575874|6|COUGH|None|0
775575874|7|COUGH|None|0
775575874|8|COUGH|None|0
775575874|9|COUGH|Mild|1
775575874|10|COUGH|Mild|1
775575874|11|COUGH|Mild|1
775575874|12|COUGH|Mild|1
775575874|13|COUGH|Mild|1
775575874|14|COUGH| |.
775575874|15|COUGH|Moderate|2
775575874|16|COUGH| |.
775575874|17|COUGH|Severe|3
775575874|18|COUGH|None|0
775575874|19|COUGH|None|0
775575874|20|COUGH|None|0
775575874|0|SOB|None|0
775575874|1|SOB|None|0
775575874|2|SOB|None|0
775575874|3|SOB|None|0
775575874|4|SOB|None|0
775575874|5|SOB|None|0
775575874|6|SOB|None|0
775575874|7|SOB|None|0
775575874|8|SOB|None|0
775575874|9|SOB|None|0
775575874|10|SOB|Mild|1
775575874|11|SOB|None|0
775575874|12|SOB|Mild|1
775575874|13|SOB|Mild|1
775575874|14|SOB| |.
775575874|15|SOB|Moderate|2
775575874|16|SOB| |.
775575874|17|SOB| |.
775575874|18|SOB|Moderate|2
775575874|19|SOB| |.
775575874|20|SOB|Severe|3
;;;;


 

 data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
  subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $8.
    sysevn			 : 1.;
  datalines4;
775575874|0|ABD|None|0
775575874|1|ABD|None|0
775575874|2|ABD|None|0
775575874|3|ABD|None|0
775575874|4|ABD|None|0
775575874|5|ABD|None|0
775575874|6|ABD|None|0
775575874|7|ABD|None|0
775575874|8|ABD|None|0
775575874|9|ABD|None|0
775575874|10|ABD|None|0
775575874|11|ABD|None|0
775575874|12|ABD|None|0
775575874|13|ABD|None|0
775575874|14|ABD|Mild|1
775575874|15|ABD|None|0
775575874|16|ABD|None|0
775575874|17|ABD|None|0
775575874|18|ABD|None|0
775575874|19|ABD|None|0	
775575874|20|ABD|None|0
775575874|0|ANOSMIA|None|0
775575874|1|ANOSMIA|None|0
775575874|2|ANOSMIA|None|0
775575874|3|ANOSMIA|None|0
775575874|4|ANOSMIA|None|0
775575874|5|ANOSMIA|None|0
775575874|6|ANOSMIA|None|0
775575874|7|ANOSMIA| |.
775575874|8|ANOSMIA|None|0
775575874|9|ANOSMIA|None|0
775575874|10|ANOSMIA|None|0
775575874|11|ANOSMIA|None|0
775575874|12|ANOSMIA|None|0
775575874|13|ANOSMIA|None|0
775575874|14|ANOSMIA| |.
775575874|15|ANOSMIA|Mild|1
775575874|16|ANOSMIA| |.
775575874|17|ANOSMIA|None|0
775575874|18|ANOSMIA|None|0
775575874|19|ANOSMIA|None|0
775575874|20|ANOSMIA|None|0
775575874|0|COUGH|None|0
775575874|1|COUGH|None|0
775575874|2|COUGH|None|0
775575874|3|COUGH|None|0
775575874|4|COUGH|None|0
775575874|5|COUGH|None|0
775575874|6|COUGH|None|0
775575874|7|COUGH|None|0
775575874|8|COUGH|None|0
775575874|9|COUGH|Mild|1
775575874|10|COUGH|Mild|1
775575874|11|COUGH|Mild|1
775575874|12|COUGH|Mild|1
775575874|13|COUGH|Mild|1
775575874|14|COUGH| |.
775575874|15|COUGH|Moderate|2
775575874|16|COUGH| |.
775575874|17|COUGH|Severe|3
775575874|18|COUGH|None|0
775575874|19|COUGH|None|0
775575874|20|COUGH|None|0
775575874|0|SOB|None|0
775575874|1|SOB|None|0
775575874|2|SOB|None|0
775575874|3|SOB|None|0
775575874|4|SOB|None|0
775575874|5|SOB|None|0
775575874|6|SOB|None|0
775575874|7|SOB|None|0
775575874|8|SOB|None|0
775575874|9|SOB|None|0
775575874|10|SOB|Mild|1
775575874|11|SOB|None|0
775575874|12|SOB|Mild|1
775575874|13|SOB|Mild|1
775575874|14|SOB| |.
775575874|15|SOB|Moderate|2
775575874|16|SOB| |.
775575874|17|SOB| |.
775575874|18|SOB|Moderate|2
775575874|19|SOB| |.
775575874|20|SOB|Severe|3
;;;;


 data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
  subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $8.
    sysevn			 : 1.;
  datalines4;
775575874|0|ABD|None|0
775575874|1|ABD|None|0
775575874|2|ABD|None|0
775575874|3|ABD|None|0
775575874|4|ABD|None|0
775575874|5|ABD|None|0
775575874|6|ABD|None|0
775575874|7|ABD|None|0
775575874|8|ABD|None|0
775575874|9|ABD|None|0
775575874|10|ABD|None|0
775575874|11|ABD|None|0
775575874|12|ABD|None|0
775575874|13|ABD|None|0
775575874|14|ABD|Mild|1
775575874|15|ABD|None|0
775575874|16|ABD|None|0
775575874|17|ABD|None|0
775575874|18|ABD|None|0
775575874|19|ABD|None|0	
775575874|20|ABD|None|0
775575874|0|ANOSMIA|None|0
775575874|1|ANOSMIA|None|0
775575874|2|ANOSMIA|None|0
775575874|3|ANOSMIA|None|0
775575874|4|ANOSMIA|None|0
775575874|5|ANOSMIA|None|0
775575874|6|ANOSMIA|None|0
775575874|7|ANOSMIA| |.
775575874|8|ANOSMIA|None|0
775575874|9|ANOSMIA|None|0
775575874|10|ANOSMIA|None|0
775575874|11|ANOSMIA|None|0
775575874|12|ANOSMIA|None|0
775575874|13|ANOSMIA|None|0
775575874|14|ANOSMIA| |.
775575874|15|ANOSMIA|Mild|1
775575874|16|ANOSMIA| |.
775575874|17|ANOSMIA|None|0
775575874|18|ANOSMIA|None|0
775575874|19|ANOSMIA|None|0
775575874|20|ANOSMIA|None|0
775575874|0|COUGH|None|0
775575874|1|COUGH|None|0
775575874|2|COUGH|None|0
775575874|3|COUGH|None|0
775575874|4|COUGH|None|0
775575874|5|COUGH|None|0
775575874|6|COUGH|None|0
775575874|7|COUGH|None|0
775575874|8|COUGH|None|0
775575874|9|COUGH|Mild|1
775575874|10|COUGH|Mild|1
775575874|11|COUGH|Mild|1
775575874|12|COUGH|Mild|1
775575874|13|COUGH|Mild|1
775575874|14|COUGH| |.
775575874|15|COUGH|Moderate|2
775575874|16|COUGH| |.
775575874|17|COUGH|Severe|3
775575874|18|COUGH|None|0
775575874|19|COUGH|None|0
775575874|20|COUGH|None|0
775575874|0|SOB|None|0
775575874|1|SOB|None|0
775575874|2|SOB|None|0
775575874|3|SOB|None|0
775575874|4|SOB|None|0
775575874|5|SOB|None|0
775575874|6|SOB|None|0
775575874|7|SOB|None|0
775575874|8|SOB|None|0
775575874|9|SOB|None|0
775575874|10|SOB|Mild|1
775575874|11|SOB|None|0
775575874|12|SOB|Mild|1
775575874|13|SOB|Mild|1
775575874|14|SOB| |.
775575874|15|SOB|Moderate|2
775575874|16|SOB| |.
775575874|17|SOB| |.
775575874|18|SOB|Moderate|2
775575874|19|SOB| |.
775575874|20|SOB|Severe|3
;;;;


 

0 Likes
Ksharp
Super User Ksharp
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-26-2022 07:24 AM (1241 views)  |   In reply to Aryyyan

Assuming I understand your question.

 

 

data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
    subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $4.
    flag1            : $1.
    flag2            : $1.;
  datalines4;
715307978|0|ABD|None| | 
715307978|1|ABD|None| | 
715307978|2|ABD|None| | 
715307978|3|ABD|Mild| |Y
715307978|4|ABD|None|Y| 
715307978|5|ABD|None| | 
715307978|6|ABD|None| | 
715307978|7|ABD|None| | 
715307978|8|ABD|None| | 
715307978|9|ABD|None| | 
715307978|0|ANOSMIA|None| | 
715307978|1|ANOSMIA|None| | 
715307978|2|ANOSMIA|None| | 
715307978|3|ANOSMIA|None| | 
715307978|4|ANOSMIA|Mild| |Y
715307978|5|ANOSMIA|None|Y| 
715307978|6|ANOSMIA|None| | 
715307978|7|ANOSMIA|None| | 
715307978|8|ANOSMIA|None| | 
715307978|9|ANOSMIA|None| | 
715307978|0|SOB|None| | 
715307978|1|SOB|None| | 
715307978|2|SOB|None| | 
715307978|3|SOB|None| | 
715307978|4|SOB|None| | 
715307978|5|SOB|None| | 
715307978|6|SOB|None| | 
715307978|7|SOB|None| | 
715307978|8|SOB|None| | 
715307978|9|SOB|None| | 
;;;;



data want;
 merge have have(keep=subject sycd sysev rename=(subject=_s sycd=_c sysev=_sev) firstobs=2);
 if subject=lag(subject) and sysev='None' and lag(sysev) ne 'None' then new_flag1='Y';
 if subject=_s and sycd=_c and _sev='None' and sysev ne 'None' then new_flag2='Y';
drop _:;
run;
0 Likes
Aryyyan
Obsidian | Level 7 Aryyyan
Obsidian | Level 7

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-26-2022 10:21 AM (1232 views)  |   In reply to Ksharp

Hi @Ksharp , 

 

I need one observation per subject*symptom where

R_T1 (Flag1) = first day of 3 consecutive days with observed severity “None”. A “Missing” grade in the middle of “None” grades disrupts the sequence and the count starts over at the next “None”. If never any symptoms on-study, or never 3 consecutive days with “None” after a grade > 0, set to 998.

For example below, for sycd ABD, I need covday 15 as R_T1,  for sycd ANOSMIA covday 17, for COUGH covday 17, and for SOB since there is never 3 consecutive none after Severe so I need value 998.

 

R_T0 (Flag2)= If a symptom was reported with grade > “None”, set to last day a symptom was reported in [0, R_T1] before 3 consecutive “None” days. If no symptom before end of diary, set to 998.

For example below, for sycd ABD, I need covday 14 as R_T1,  for sycd ANOSMIA covday 15, for COUGH covday 18, and for SOB since there is never 3 consecutive none after Severe so I need value 998.

 

Please check new dataset above that I posted. 

 

Thank you for your help. 

0 Likes
Ksharp
Super User Ksharp
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-27-2022 07:59 AM (1212 views)  |   In reply to Aryyyan

OK. My bad. You want "3 consecutive days with observed severity “None”. " . Try this :

 

data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
    subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $4.
    flag1            : $1.
    flag2            : $1.;
  datalines4;
715307978|0|ABD|None| | 
715307978|1|ABD|None| | 
715307978|2|ABD|None| | 
715307978|3|ABD|Mild| |Y
715307978|4|ABD|None|Y| 
715307978|5|ABD|None| | 
715307978|6|ABD|None| | 
715307978|7|ABD|None| | 
715307978|8|ABD|None| | 
715307978|9|ABD|None| | 
715307978|0|ANOSMIA|None| | 
715307978|1|ANOSMIA|None| | 
715307978|2|ANOSMIA|None| | 
715307978|3|ANOSMIA|None| | 
715307978|4|ANOSMIA|Mild| |Y
715307978|5|ANOSMIA|None|Y| 
715307978|6|ANOSMIA|None| | 
715307978|7|ANOSMIA|None| | 
715307978|8|ANOSMIA|None| | 
715307978|9|ANOSMIA|None| | 
715307978|0|SOB|None| | 
715307978|1|SOB|None| | 
715307978|2|SOB|None| | 
715307978|3|SOB|None| | 
715307978|4|SOB|None| | 
715307978|5|SOB|None| | 
715307978|6|SOB|None| | 
715307978|7|SOB|None| | 
715307978|8|SOB|None| | 
715307978|9|SOB|None| | 
;;;;


data _have;
n=0;
do  until(last.sysev);
 set have;
 by subject sycd sysev  notsorted;
 n+1;
end;
do until(last.sysev);
 set have;
 by  subject sycd sysev notsorted;
 output;
end;
run;


data want;
 merge _have _have(keep=subject sycd sysev n rename=(subject=_s sycd=_c sysev=_sev n=_n) firstobs=2);
 if subject=lag(subject) and sysev='None' and lag(sysev) ne 'None' and n>3 then new_flag1='Y';
 if subject=_s and sycd=_c and _sev='None' and sysev ne 'None'  and _n>3 then new_flag2='Y';
drop _: n;
run;
Aryyyan
Obsidian | Level 7 Aryyyan
Obsidian | Level 7

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-27-2022 11:46 AM (1194 views)  |   In reply to Ksharp

Thank you @Ksharp. It is very helpful but I want  "3 consecutive days with observed severity “None” after "Last Not-None (Missing, Mild, Moderate, or Severe)" severity. 

0 Likes
Reeza
Super User Reeza
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-27-2022 12:33 PM (1185 views)  |   In reply to Aryyyan
@Aryyyan wrote:

Thank you @Ksharp. It is very helpful but I want  "3 consecutive days with observed severity “None” after "Last Not-None (Missing, Mild, Moderate, or Severe)" severity. 

As I noted a few days ago, that criteria is in your subject line but you weren't including it in your actual requirements.

0 Likes
Ksharp
Super User Ksharp
Super User

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-28-2022 07:26 AM (1168 views)  |   In reply to Aryyyan

OK . You want this ?

 

 

data have;
  infile datalines4
    dlm='|'
    truncover
    dsd;
  input
    subject          : $9.
    covday           : best32.
    sycd             : $7.
    sysev            : $4.
    flag1            : $1.
    flag2            : $1.;
  datalines4;
715307978|0|ABD|None| | 
715307978|1|ABD|None| | 
715307978|2|ABD|None| | 
715307978|3|ABD|Mild| |Y
715307978|4|ABD|None|Y| 
715307978|5|ABD|None| | 
715307978|6|ABD|None| | 
715307978|7|ABD|None| | 
715307978|8|ABD|None| | 
715307978|9|ABD|None| | 
715307978|0|ANOSMIA|None| | 
715307978|1|ANOSMIA|None| | 
715307978|2|ANOSMIA|None| | 
715307978|3|ANOSMIA|None| | 
715307978|4|ANOSMIA|Mild| |Y
715307978|5|ANOSMIA|None|Y| 
715307978|6|ANOSMIA|None| | 
715307978|7|ANOSMIA|None| | 
715307978|8|ANOSMIA|None| | 
715307978|9|ANOSMIA|None| | 
715307978|10|ANOSMIA|Mild| |Y
715307978|11|ANOSMIA|None|Y| 
715307978|12|ANOSMIA|None| | 
715307978|13|ANOSMIA|None| | 
715307978|0|SOB|None| | 
715307978|1|SOB|None| | 
715307978|2|SOB|None| | 
715307978|3|SOB|None| | 
715307978|4|SOB|None| | 
715307978|5|SOB|None| | 
715307978|6|SOB|None| | 
715307978|7|SOB|None| | 
715307978|8|SOB|None| | 
715307978|9|SOB|None| | 
;;;;


data _have;
n=0;
do  until(last.sysev);
 set have;
 by subject sycd sysev  notsorted;
 n+1;
 if last.sycd then last_group=1;
end;
do until(last.sysev);
 set have;
 by  subject sycd sysev notsorted;
 output;
end;
run;


data want;
 merge _have _have(keep=subject sycd sysev n last_group
 rename=(subject=_s sycd=_c sysev=_sev n=_n last_group=_last_group) firstobs=2);
 if subject=lag(subject) and sysev='None' and lag(sysev) ne 'None' and n>2 and last_group then new_flag1='Y';
 if subject=_s and sycd=_c and _sev='None' and sysev ne 'None'  and _n>2 and _last_group  then new_flag2='Y';
drop _: n last_group;
run;
Aryyyan
Obsidian | Level 7 Aryyyan
Obsidian | Level 7

Re: Find 3 consecutive "None" values after last not-None value. Flag that value and flag v

Posted 01-28-2022 12:40 PM (1154 views)  |   In reply to Ksharp
Yup, thank you so much for your help!!!
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