If you want to avoid entering your dependency information manually, I think the only way is to promote/replicate metadata for the repository that holds your scheduling information, probably Foundation?
To do so, use the Job definitions in the Metadata Manager plugin in SMC. Beware that all target metadata will be overwritten by metadata from the source repository. After promotion/replication, you have to "Reschedule all flows..." from the Schedule Manager plugin.
/Linus
Data never sleeps