The dataset doesn't disappear, just the data itself. For example, when i go to output the dataset to the work library there are 50 rows and 20 columns. When I change the library for it to save into to a permanent library, it ouputs 50 rows and 0 columns (just row numbers).
Now I have gone on to our metadata server and went to open up the permanent dataset that i attempted to create. I opened it via base SAS, and the dataset opened fine and appeared as it should. So even though there is no output in EG, the dataset is being created fine. However, when I go to use this dataset in Information Map Studio (or view it in Mgmt Console) it does not recognize any fields. Herein lies the problem.