I don't know of any way to change the default options, but you could probably write some code to find any that don't have those options set. Something like:
data _null_;
length type id uri $ 50 flow_name $ 255;
call missing (of _character_);
obj="omsobj:JFJob?JFJob[Properties/Property[@Name='QUEUE' and @DefaultValue ne 'Dev']][Properties/Property[@Name='FlowExclusiveCriteria' and @DefaultValue ne 'Yes']][Properties/Property[@Name='FlowEndBehavior' and @DefaultValue ne '3']]";
flow_rc=metadata_resolve(obj,type,id);
put "NOTE: Found " flow_rc "flows that didn't have a the requisite properties set.";
if flow_rc > 0 then do i=1 to flow_rc;
rc=metadata_getnobj(obj,i,uri);
rc=metadata_getattr(uri,"Name",flow_name);
put uri= flow_name=;
end;
run;
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