I am running this code:
PROC GEE DATA=test DESCENDING ;
CLASS id testcat(desc ref='0') fiscal_yr;
MODEL ldl_lt100(REF='1')=testcat fiscal_yr /DIST=MULTINOMIAL LINK=GLOGIT TYPE3;
REPEATED SUB=id/WITHIN=fiscal_yr;
LSMEANS testcat/ILINK ODDSRATIO DIFF CL;
RUN;
My outcome is 0, 1 or 2. I want the reference group to be 1.
Currently, the LSMEANS is showing this in the LSMEANS differences table:
Table 1:
| ldl_lt100 | testcat | _testcat |
| 2 | 2 | 1 |
| 2 | 2 | 0 |
| 2 | 1 | 0 |
| 1 | 2 | 1 |
| 1 | 2 | 0 |
| 1 | 1 | 0 |
However, I want:
Table 2:
| ldl_lt100 | testcat | _testcat |
| 2 | 2 | 1 |
| 2 | 2 | 0 |
| 2 | 1 | 0 |
| 0 | 2 | 1 |
| 0 | 2 | 0 |
| 0 | 1 | 0 |
The weird/interesting thing here is that I get the output I want (Table 2) in the unadjusted model, but as soon as I add covariates, it shows Table 1.
