Re: first. and last.

RAVI2000 · Posted 07-01-2022 03:56 PM

Hi all,

I have the below data and I would like to obtain subjects that have same AEDECOD and AEOUT="Not-recovered/Not-resolved" but end date (AEENDTC) is present.

data have;
input subject @5 aedecod $ 5-42 @43 aestdtn yymmdd10. @54 aeout $ 54-81 @80 aeendtn yymmdd10.;
format aestdtc aeendtc yymmdd10.;
datalines;
001 Fatigue                               2019-06-03 Not-recovered/Not-resolved .
001 Nausea                                2019-06-03 Not-recovered/Not-resolved .
001 Vomiting                              2019-06-03 Not-recovered/Not-resolved .
003 Asthenia                              2019-08-28 Recovered/Resolved         2019-08-28
003 Hypothension                          2019-06-25 Recovered/Resolved         2019-08-08
003 Thrombocytopenia                      2019-07-11 Recovered/Resolved         2019-07-23
003 Thrombocytopenia                      2019-07-18 Recovered/Resolved         2019-08-04
003 Thrombocytopenia                      2019-08-12 Not-recovered/Not-resolved 2019-08-12
004 Anaemia                               2019-07-10 Not-recovered/Not-resolved .
004 Blood creatinine increased            2019-08-19 Recovered/Resolved         2019-09-04
004 Blood creatinine increased            2019-09-02 Recovered/Resolved         2019-11-13
004 Blood creatinine increased            2019-11-11 Recovered/Resolved         2019-12-08
004 Epistaxis                             2019-01-21 Not-recovered/Not-resolved .
004 Epistaxis                             2019-11-25 Recovered/Resolved         2019-11-28
004 Thrombocytopenia                      2019-12-02 Not-recovered/Not-resolved .
004 Upper respiratory tract infection     2019-10-10 Recovered/Resolved         2019-10-13
005 Alanine aminotransfrerase increased   2019-08-14 Not-recovered/Not-resolved 2020-08-20
005 Alanine aminotransfrerase increased   2019-08-21 Recovered/Resolved         2020-09-06
005 Alanine aminotransfrerase increased   2019-09-07 Not-recovered/Not-resolved .
005 Aspartate aminotransfrerase increased 2019-08-14 Not-recovered/Not-resolved 2020-08-20
005 Aspartate aminotransfrerase increased 2019-08-21 Recovered/Resolved         2020-09-06
005 Aspartate aminotransfrerase increased 2019-09-07 Not-recovered/Not-resolved .
005 Blood creatinine increased            2019-05-29 Not-recovered/Not-resolved 2020-07-20
005 Cellulitis                            2020-07-01 Not-recovered/Not-resolved 2020-08-19
005 Cellulitis                            2020-08-20 Recovering/Resolving       2020-09-25
005 Cellulitis                            2020-08-26 Not-recovered/Not-resolved 2020-10-01
005 Chills                                2019-12-26 Recovered/Resolved         2019-12-27
005 Chloroma                              2020-04-30 Not-recovered/Not-resolved 2020-12-30
005 Cholelithiasis                        2020-08-18 Recovered/Resolved         2020-08-20
005 Epistaxis                             2019-12-17 Recovering/Resolving       2019-12-26
005 Pyrexia                               2020-08-16 Recovered/Resolved         2020-08-20
005 Pyrexia                               2020-08-20 Not-recovered/Not-resolved .
005 Subcutaneous haematoma                2020-01-24 Not-recovered/Not-resolved .
005 Urinary Tract infection               2020-08-20 Recovering/Resolving       2020-08-25
005 Urinary Tract infection               2020-08-26 Not-recovered/Not-resolved .
;
run;

I was trying the below code:

proc sort data=have;
	by subject aedecod aestdtn;
run;

data aeout1;
	set have;
	by subject aedecod aestdtn;
	if first.subject and first.decod then ord=1;
	else ord+1;
run;

proc sort data=aeout1 out=aeout2;
	by subject aedecod aestdtn;
	where ord ge 2;
run;

data aeout3;
	set aeout2;
	by subject aedecod aestdtn;
	if last.subject;
run;

data aeout4;
	merge aeout1(in=ot1) aeout(in=ot3);
	by usubjid;
	if ot1 and not ot3;
	length note $100;
	if aeout="Not-recovered/Not-resolved" and aeendtn ne . then note=strip(subject)||'AEENDTC is populated with AEOUT still being "Not-recovered/Not-resolved with same DECODE"';
	else note='';
proc print;
run;

I am not getting what I desired for with the above code.

I want like below:

As you see above, all the different decodes for same subject are filtered with aeout not resovered/not resolved and aeendtc not missing

Sajid01 · Posted 07-01-2022 06:14 PM

The following code gives the result you wanted. Please note the correction I made to your datastep code.
Your phrase "subjects that have same AEDECOD" is not comprehensible to me.
The result however is the same as you wanted as given below

data have;
input subject @5 aedecod $ 5-42 @43 aestdtn yymmdd10. @54 aeout $ 54-80 @81 aeendtn yymmdd10.;
format aestdtn aeendtn yymmdd10.;

datalines;
001 Fatigue                               2019-06-03 Not-recovered/Not-resolved .
001 Nausea                                2019-06-03 Not-recovered/Not-resolved .
001 Vomiting                              2019-06-03 Not-recovered/Not-resolved .
003 Asthenia                              2019-08-28 Recovered/Resolved         2019-08-28
003 Hypothension                          2019-06-25 Recovered/Resolved         2019-08-08
003 Thrombocytopenia                      2019-07-11 Recovered/Resolved         2019-07-23
003 Thrombocytopenia                      2019-07-18 Recovered/Resolved         2019-08-04
003 Thrombocytopenia                      2019-08-12 Not-recovered/Not-resolved 2019-08-12
004 Anaemia                               2019-07-10 Not-recovered/Not-resolved .
004 Blood creatinine increased            2019-08-19 Recovered/Resolved         2019-09-04
004 Blood creatinine increased            2019-09-02 Recovered/Resolved         2019-11-13
004 Blood creatinine increased            2019-11-11 Recovered/Resolved         2019-12-08
004 Epistaxis                             2019-01-21 Not-recovered/Not-resolved .
004 Epistaxis                             2019-11-25 Recovered/Resolved         2019-11-28
004 Thrombocytopenia                      2019-12-02 Not-recovered/Not-resolved .
004 Upper respiratory tract infection     2019-10-10 Recovered/Resolved         2019-10-13
005 Alanine aminotransfrerase increased   2019-08-14 Not-recovered/Not-resolved 2020-08-20
005 Alanine aminotransfrerase increased   2019-08-21 Recovered/Resolved         2020-09-06
005 Alanine aminotransfrerase increased   2019-09-07 Not-recovered/Not-resolved .
005 Aspartate aminotransfrerase increased 2019-08-14 Not-recovered/Not-resolved 2020-08-20
005 Aspartate aminotransfrerase increased 2019-08-21 Recovered/Resolved         2020-09-06
005 Aspartate aminotransfrerase increased 2019-09-07 Not-recovered/Not-resolved .
005 Blood creatinine increased            2019-05-29 Not-recovered/Not-resolved 2020-07-20
005 Cellulitis                            2020-07-01 Not-recovered/Not-resolved 2020-08-19
005 Cellulitis                            2020-08-20 Recovering/Resolving       2020-09-25
005 Cellulitis                            2020-08-26 Not-recovered/Not-resolved 2020-10-01
005 Chills                                2019-12-26 Recovered/Resolved         2019-12-27
005 Chloroma                              2020-04-30 Not-recovered/Not-resolved 2020-12-30
005 Cholelithiasis                        2020-08-18 Recovered/Resolved         2020-08-20
005 Epistaxis                             2019-12-17 Recovering/Resolving       2019-12-26
005 Pyrexia                               2020-08-16 Recovered/Resolved         2020-08-20
005 Pyrexia                               2020-08-20 Not-recovered/Not-resolved .
005 Subcutaneous haematoma                2020-01-24 Not-recovered/Not-resolved .
005 Urinary Tract infection               2020-08-20 Recovering/Resolving       2020-08-25
005 Urinary Tract infection               2020-08-26 Not-recovered/Not-resolved .
;
run;
proc sql;
select * from have
where not missing(aeendtn)
and trim(AEOUT)="Not-recovered/Not-resolved";
quit;

The result is

mkeintz · Posted 07-01-2022 06:36 PM

Why does your sample expected output include a subject=5 and aedecod="Blood creatinene increased"?

That output record is the only input record for this subject/aedecod combination. Yet your stated criterion includes "subjects that have same AEDECOD". I take this to mean records in which a given subject/aedecod combination appears more than once (and then keep those records which also have a non-missing date and AEOUT="Not-recovered/Not-resolved"). If your sample output is not a mistake, could you make your objective more precise? I'm missing something.

And I have the same question about why your output has a subject=5 and aedecod="Chloroma". Again, "Chloroma" appears only once for this subject.

Now if those records should not be in the output, then this program does what I understand you want.

data have;
x=_n_;
input subject @5 aedecod $ 5-42 @43 aestdtn yymmdd10. @54 aeout $ 54-80 @81 aeendtn yymmdd10.;

*format aestdtc aeendtc yymmdd10.;
 format aestdtn aeendtn yymmdd10.;
datalines;
001 Fatigue                               2019-06-03 Not-recovered/Not-resolved .
001 Nausea                                2019-06-03 Not-recovered/Not-resolved .
001 Vomiting                              2019-06-03 Not-recovered/Not-resolved .
003 Asthenia                              2019-08-28 Recovered/Resolved         2019-08-28
003 Hypothension                          2019-06-25 Recovered/Resolved         2019-08-08
003 Thrombocytopenia                      2019-07-11 Recovered/Resolved         2019-07-23
003 Thrombocytopenia                      2019-07-18 Recovered/Resolved         2019-08-04
003 Thrombocytopenia                      2019-08-12 Not-recovered/Not-resolved 2019-08-12
004 Anaemia                               2019-07-10 Not-recovered/Not-resolved .
004 Blood creatinine increased            2019-08-19 Recovered/Resolved         2019-09-04
004 Blood creatinine increased            2019-09-02 Recovered/Resolved         2019-11-13
004 Blood creatinine increased            2019-11-11 Recovered/Resolved         2019-12-08
004 Epistaxis                             2019-01-21 Not-recovered/Not-resolved .
004 Epistaxis                             2019-11-25 Recovered/Resolved         2019-11-28
004 Thrombocytopenia                      2019-12-02 Not-recovered/Not-resolved .
004 Upper respiratory tract infection     2019-10-10 Recovered/Resolved         2019-10-13
005 Alanine aminotransfrerase increased   2019-08-14 Not-recovered/Not-resolved 2020-08-20
005 Alanine aminotransfrerase increased   2019-08-21 Recovered/Resolved         2020-09-06
005 Alanine aminotransfrerase increased   2019-09-07 Not-recovered/Not-resolved .
005 Aspartate aminotransfrerase increased 2019-08-14 Not-recovered/Not-resolved 2020-08-20
005 Aspartate aminotransfrerase increased 2019-08-21 Recovered/Resolved         2020-09-06
005 Aspartate aminotransfrerase increased 2019-09-07 Not-recovered/Not-resolved .
005 Blood creatinine increased            2019-05-29 Not-recovered/Not-resolved 2020-07-20
005 Cellulitis                            2020-07-01 Not-recovered/Not-resolved 2020-08-19
005 Cellulitis                            2020-08-20 Recovering/Resolving       2020-09-25
005 Cellulitis                            2020-08-26 Not-recovered/Not-resolved 2020-10-01
005 Chills                                2019-12-26 Recovered/Resolved         2019-12-27
005 Chloroma                              2020-04-30 Not-recovered/Not-resolved 2020-12-30
005 Cholelithiasis                        2020-08-18 Recovered/Resolved         2020-08-20
005 Epistaxis                             2019-12-17 Recovering/Resolving       2019-12-26
005 Pyrexia                               2020-08-16 Recovered/Resolved         2020-08-20
005 Pyrexia                               2020-08-20 Not-recovered/Not-resolved .
005 Subcutaneous haematoma                2020-01-24 Not-recovered/Not-resolved .
005 Urinary Tract infection               2020-08-20 Recovering/Resolving       2020-08-25
005 Urinary Tract infection               2020-08-26 Not-recovered/Not-resolved .
run;

data want;
  set have (where=(aeout^='Not-recovered/Not-resolved'))
      have (where=(aeout='Not-recovered/Not-resolved' and aeendtn=.))
      have (where=(aeout='Not-recovered/Not-resolved' and aeendtn^=.));
  by subject aedecod;
  if aeout='Not-recovered/Not-resolved' and aeendtn^=.; /*all qualifying records  ...*/
  if not (first.aedecod=1 and last.aedecod=1) ;         /* ... that are not singletons */
run;

Fortunately, your data are already sorted by subject/aedecod. So for each subject/aedecod the program above first reads all instances that do not have aedecod="Not-recovered/Not-resolved", followed by any dateless instances that do have aedecod="Not-recovered/Not-resolved, finally followed by qualifying records (non-missing date and aedecod="Not-recovered/Not-resolved"). So as long as those qualifying records are not the only ones for that subject/aedecod, the record is output.

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first. and last.

Re: first. and last.

Re: first. and last.

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