Hello to all!
Today I started some serious work in SAS/Genetics and found a problem :smileyconfused:
I would like to get composite LD correlation matrix or at least table then I will find a way to create matrix from it (probably will post another question here).
So I am interested in Composite LD which can be obtained using proc allele with haplo = none or nonhwd. Later on I must perform PCA on this matrix...
Does anyone knows how to get LD values in sas table or matrix as output when using proc allele???
Thanks in advance!
Maja
ODS OUTPUT is probably what you will need. If you specify any of the options
CORRCOEFF, DELTA, DPRIME, PROPDIFF, RHO, or YULESQ
then using
ods output ldmeasures=ldmeasures;
will give a dataset with the results I think you are looking for.
Steve Denham
ODS OUTPUT is probably what you will need. If you specify any of the options
CORRCOEFF, DELTA, DPRIME, PROPDIFF, RHO, or YULESQ
then using
ods output ldmeasures=ldmeasures;
will give a dataset with the results I think you are looking for.
Steve Denham
Yes,
that looks OK.
Thank you for your help
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