The surrogate model example is providing a solution to assess the variable importance of the neural net (black box model). If you want to make decision or prediction use the posterior probability values derived from the NN model directly. Because the posterior Probability reported in the surrogate decision tree model is not adjusted for over-sample or priors.
Therefore, in the course notes in case you need to use the posterior probabilities from the surrogate model, they provide the following solutions:
1) Use the scored data where event distribution reflects what is available in the reference population.
2) You could also use SAS code editor in EM and adjust for priors and decision weights (Not in the course notes)
3) In the transform node there is a rudimentary SAS code option where you create a weight variable (based on prior probability values) an assign a role of frequency. That way you can adjust the posterior probability for priors.
Please note this weight option is different from survey design weights and SAS EM is not meant for using survey data. It is recommend for building predictive models.