Hello Trish,
Yes, the variables with the large mode percentage are set to rejected using the metadata node.
One alternative to the provided solution may be to set the data partition node to perform a stratified simple random sample, stratifying on those variables with a large mode to ensure all values in the variables exist in each partition. To do this, click the variables ellipsis in the data partition node. Then change the Partition Role value from default to Stratification for the categorical variables of interest. If a level is VERY rare, then sometimes this approach may not work and you'll receive an error from the node.
Good luck!
Best,
Robert