It is somewhat complex as you installed in your station. You can try the configure file but it always disabled the system.The best way is to reinstall it, in the process to change the default settings.
Another thing you can do, if you want your output stored in different project folders, is to use the X command. Frequently, I switch between several different projects during the day. So I have an X command at the top of a program file to change the working directory. Then I either change it back at the end of the program, or, when I log off, the working directory will be the default the next time I log on.
x 'cd c:\Project1\Output';
Just a note: the X command does NOT work in an EG environment.