Is the problem reproducible?
If so then just ask your data step to show you the records where you are seeing the skip.
Note: Do NOT overwrite your input as it will make debugging very hard.
data WANT; set have; retain t 0; select; when (amount NE 0) t=t+1; otherwise; end; if t in (3615 3616 119401 119402) then put _all_ ; run;
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