topic Re: R^2 Command for finding LD HELP! in Statistical Procedures https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75829#M3637 Linkage Disequilibrium.....<BR /> <BR /> Hope it helps.... Message was edited by: TA-9ff Wed, 14 Oct 2009 21:45:48 GMT TA_9ff 2009-10-14T21:45:48Z R^2 Command for finding LD HELP! https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75827#M3635 How can I find R^2 in Output when I'm calculating LD?<BR /> <BR /> Can someone help me with the commands?<BR /> <BR /> Thanks! Wed, 14 Oct 2009 21:21:24 GMT https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75827#M3635 TA_9ff 2009-10-14T21:21:24Z Re: R^2 Command for finding LD HELP! https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75828#M3636 LD? Wed, 14 Oct 2009 21:24:49 GMT https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75828#M3636 deleted_user 2009-10-14T21:24:49Z Re: R^2 Command for finding LD HELP! https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75829#M3637 Linkage Disequilibrium.....<BR /> <BR /> Hope it helps.... Message was edited by: TA-9ff Wed, 14 Oct 2009 21:45:48 GMT https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75829#M3637 TA_9ff 2009-10-14T21:45:48Z Re: R^2 Command for finding LD HELP! https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75830#M3638 what procedure(s) are you using OR post your code? Wed, 14 Oct 2009 21:53:22 GMT https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75830#M3638 deleted_user 2009-10-14T21:53:22Z Re: R^2 Command for finding LD HELP! https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75831#M3639 Add the CORRCOEF option to the PROC ALLELE statement. The statistic produced is R, not R^2. See <B>Example 3.2: Computing Linkage Disequilibrium Measures for SNP Data</B> of the ALLELE procedure documentation.<BR /> <BR /> Dale Thu, 15 Oct 2009 20:25:17 GMT https://communities.sas.com/t5/Statistical-Procedures/R-2-Command-for-finding-LD-HELP/m-p/75831#M3639 Dale 2009-10-15T20:25:17Z