topic Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r in Statistical Procedures

Should I use "Offset" or add a "rate" variable in the data set for Poisson regression?

jj02148 — Thu, 12 Jan 2017 17:10:53 GMT

Hi All,

I ran into a Poisson regression analysis issue. My data contain "counts" for an event and "days" for the event. I am fosusing on the "rate", which is counts/days. Usually people would use Poisson regression to fit the rate data by doing:

Model Event = treat /offset=log(days).

However, I am wondering if it makes sense to add a "rate" variable in the data set by doing: event_rate = events/days, and then fit the Poisson model:

Model event_rate = treat.

Thanks for your comments and help.

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

PGStats — Thu, 12 Jan 2017 23:10:28 GMT

Unless your number of days varies very little, you should stick with the offset model to get valid inferences.

If you decide to go with event_rate, it should be defined as event/days*meanDays, where meanDays is the mean number of days in your data.

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

jj02148 — Thu, 12 Jan 2017 23:56:40 GMT

Hi PG,

Thanks for the comment. That is very helpful. Just for my personal education. Why the offset model gives better inference? Mathematically the offset model and the event_rate are the same, right?

log(u/t) = alpha+beta*x --> log(u) - log(t) = alpha+beta*x --> log(u) = log(t) + alpha+beta*x

Thanks,

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

PGStats — Fri, 13 Jan 2017 05:10:43 GMT

The models look the same, but the likelihood equations aren't. The estimates will be the same (for offset and event_rate= event/days models) but the standard error of the estimates will differ. Look at this small simulation:

data a;
call streaminit(7576);
rate = 10;
do days = 10, 100;
    logDays = log(days);
    do i = 1 to 20;
        event = rand("Poisson", rate*days);
        event_rate1 = event / days;
        event_rate2 = event / days * mean(10, 100);
        event_rate3 = event / days * 1000;
        output;
        end;
    end;
run;

ods select ParameterEstimates(persist);

title "Estimate of log number per day with Offset";
proc glimmix data=a;
model event = / dist=poisson offset=logDays solution;
run;

title "Estimate of log rate per day";
proc glimmix data=a;
model event_rate1 = / dist=poisson solution;
run;

title "Estimate of log rate per 55 days";
proc glimmix data=a;
model event_rate2 = / dist=poisson solution;
run;

title "Estimate of log rate per 1000 days";
proc glimmix data=a;
model event_rate3 = / dist=poisson solution;
run;

                     Estimate of log number per day with Offset       

                               The GLIMMIX Procedure

                                Parameter Estimates

                                  Standard
         Effect       Estimate       Error       DF    t Value    Pr > |t|
         Intercept      2.3091    0.006720       39     343.62      <.0001
		 
                            Estimate of log rate per day                          

                                Parameter Estimates

                                  Standard
         Effect       Estimate       Error       DF    t Value    Pr > |t|
         Intercept      2.2992     0.05008       39      45.91      <.0001
		 
                          Estimate of log rate per 55 days                        

                                Parameter Estimates

                                  Standard
         Effect       Estimate       Error       DF    t Value    Pr > |t|
         Intercept      6.3065    0.006753       39     933.83      <.0001
		 
                         Estimate of log rate per 1000 days                       

                                Parameter Estimates

                                  Standard
         Effect       Estimate       Error       DF    t Value    Pr > |t|
         Intercept      9.2070    0.001584       39    5813.16      <.0001

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

jj02148 — Fri, 13 Jan 2017 14:20:19 GMT

Thanks @PG, this is very helpful!

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

jj02148 — Fri, 13 Jan 2017 15:07:59 GMT

Again, thanks @PG. Sorry for having so many questions. Your simulation is very helpful. However, if one wants to pick an estimate, which one should he use?

It seems that using "Offset" gives pretty similar "estimate" as "Rate" does, although the SEs are different. But if using "Rate*Mean(days)", it gives completely different "estimate" but similar SEs.

I also tried my real data using PROC GENMOD on both Offset model and Rate model. It seems that the two give pretty close results in terms of "estimate" and "SE".

Here are my code snippets:

1. Poisson model with offset

proc genmod data=final;
 title "BV-003 Part 2 - Poisson Model";
 class ptno treat;

 model numcr = treat /type3 dist=poi offset=logdayct;
 repeated subject=ptno;

 estimate 'D vs A' treat -1 1 0/exp;
 estimate 'E vs A' treat -1 0 1/exp;
 estimate 'D vs E' treat 0 1 -1/exp;
run;

2. Poisson model with rate data:

proc genmod data=final;
 title "BV-003 Part 2 - Poisson Model on the Cramp/Day Ratio";
 class ptno treat;

 model crp_day = treat /type3 dist=poi;
 repeated subject=ptno;

 estimate 'D vs A' treat -1 1 0/exp;
 estimate 'E vs A' treat -1 0 1/exp;
 estimate 'E vs D' treat 0 1 -1/exp;
run;

And here are the outputs:

For 1,

For 2,

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

JacobSimonsen — Wed, 18 Jan 2017 09:31:52 GMT

I think that you can model the rate and get exactly same estimates and standard errors as if you model the count. But, the person-years should then be used in the weight statement.

The two proc genmod statements below seems to give exactly same output.

data test;

do i=1 to 100;

pyrs=rand('uniform',0,5);

a=rand('bernoulli',0.5);

y=rand('poisson',pyrs*exp(2+a*1));

logpyrs=log(pyrs);

rate=y/pyrs;

output;

end;

run;

proc genmod data=test;

class a(ref="0");

model y=a/dist=poisson link=log offset=logpyrs;

run;

proc genmod data=test;

class a(ref="0");

model rate=a/dist=poisson link=log;

weight pyrs;

run;

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

jj02148 — Wed, 18 Jan 2017 12:45:11 GMT

Thanks, @JacobSimonsen. This is very helpful.

Re: Should I use "Offset" or add a "rate" variable in the data set for Poisson r

JacobSimonsen — Wed, 18 Jan 2017 13:13:59 GMT

its because the expression for the likelihood function λ^x e^-pyrs*λ is the same as (λ^x/pyrs e^-λ)^pyrs