topic RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS in Graphics Programming

RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

DavidsM — Sat, 27 Oct 2018 15:08:27 GMT

Hello our esteemed advisers and community,

I am seeking assistance about plotting graph for large data sets. I have very big data set with over 100,000,000 observations but I have tried plotting these calibration graphs and SAS returns an error of maximum observations exceeded. I tried using the option of changing maximum observations so that I can plot but still I cannot draw beyond 2,000,000 observations.

I will be glad to be advised on how to handle this problem.

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

DanH_sas — Sat, 27 Oct 2018 18:11:49 GMT

With that many observations, you should probably use a HEATMAP instead of a SCATTER plot. Compare the output from these two outputs:

proc sgplot data=sashelp.heart;
heatmap x=weight y=height;
run;

proc sgplot data=sashelp.heart;
scatter x=weight y=height;
run;

The HEATMAP statement will process the data in a way that will greatly reduce the actual number of observations processed by the rendering code.

Hope this helps!

Dan

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

Ksharp — Sun, 28 Oct 2018 10:30:33 GMT

Or check PROC KDE + BIVAR statement.

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

DavidsM — Sun, 28 Oct 2018 22:05:50 GMT

Hello my advisors,

The Heat map and scatter also return the same messages of exceeded 2000000 observations. I have tried PROC KDE + BIVAR statement and I says out of memory but the procedure had started running.

This out of memory problem has also prevented Heat map approach.

I will be glad for additional advise.

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

Ksharp — Mon, 29 Oct 2018 12:35:45 GMT

Could you make your SAS session has more memory by options -memsize 0

proc kde data=octane;
bivar Rater Customer / plots=CONTOUR;
run;

or use OUT= save the dataset and plot it later.

ods select none;
proc kde data=octane;
bivar Rater Customer / out=want;
run;
ods select all;

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

DavidsM — Wed, 31 Oct 2018 04:55:42 GMT

Thank you Ksharp for the assistance.

The procedure below works and I have been able to draw one of the graphs from a large dataset.

proc kde data=octane; bivar Rater Customer / plots=CONTOUR; run;

There is one more assitance am requesting you to help me. The graph produced has a black back ground and I would like to change the back ground to other colors like white and make the plotted points clear. And also if possible place a line at 45 angle to indicate the straight line for a perfect calibration so that it clearly shows the devaition from the line.

I have attached the output graph on this reply, I request you to check it and advise me on how to improve its appearance.

I will be glad if am assisted to make it look better.

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

Ksharp — Wed, 31 Oct 2018 12:55:43 GMT

I would not like to download DOC file from website due to virus.

Check PROC KDE's documentation. Maybe you could find an option you need.

" if possible place a line at 45 angle to indicate the straight line for a perfect calibration so that it clearly shows the devaition from the line. "

I would suggest save the output as a dataset and plot it with PROC SGPLOT + LINEPARM statement.

ods trace on;

proc kde......

ods trace off;

could give you the NAME of output. and save it as a dataset like:

ods output xxxxxx=xxxxxxx;

proc kde..............

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

GraphGuy — Mon, 12 Nov 2018 12:52:22 GMT

Although this one has been solved, I wanted to mention another solution.

You could use SAS/Graph Proc Gplot - it doesn't seem to have a limit to the number of observations plotted.

For example, I created a random dataset with 100,000,000 observations, and used semi-transparents points as my plot marker, and came up with the following plot.

I ran this on a Linux machine, and lifted the default SAS memory size limit by starting the SAS session with "sas -memsize 0 &" ... and it took, umm, "quite a while" to run ... cpu time 3:55:37.78 (but it did run!)

data my_data (keep = x y);
seed1=12345;
seed2=98765;
do count=1 to 100000000;
call rannor(seed1,x);
call rannor(seed2,y);
output;
end;
run;

symbol1 value=point interpol=none color=A00000033;
proc gplot data=my_data;
plot y*x=1;
run;

Re: RE: PLOTTING GRAPH FOR DATA CONTAINING MANY OBSERVATIONS

Jay54 — Mon, 12 Nov 2018 18:36:10 GMT

Just to see what is going on, I ran Robert's data with SGPLOT, using some options to allow larger data (maxobs=100000000).

The SCATTER plot still did not finish due to lack of Java memory.

However, the HEATMAP did run with default SAS startup settings and the graph completed in 02:20:63 of real time on a Windows box. The HeatMap is a better visual, as you can actually see the distribution of the data instead of a big black blob. :-). Binning is done on the server, and only the resulting bins are sent to the Java renderer for drawing. I used 320x240 bins as there is no point in creating bins < a pixel. This gives 2x2 pixel bins. Image attached.

data my_data (keep = x y);
seed1=12345;
seed2=98765;
do count=1 to 100000000;
call rannor(seed1,x);
call rannor(seed2,y);
output;
end;
run;

ods html close;
ods listing gpath='C:\temp';
ods graphics / maxobs=100000000 NXYBINSMAX=80000 imagename='BigData';
proc sgplot data=my_data;
heatmap x=x y=y / nxbins=320 nybins=240 colormodel=(green yellow red);
run;