topic import fastq format file in SAS Programming

import fastq format file

Niugg2010 — Thu, 29 Sep 2016 21:31:50 GMT

I have gene sequence file with the format is ".fastq". How can I impout fastq file in to sas for data dealing? Thanks.

Reeza — Thu, 29 Sep 2016 21:42:10 GMT

It looks like it's a text file,so you can use standard text processing. That being said, it also looks like a complex file.

If you need assistance, its best to post a sample of the file, attach it as a .txt file or post in the message.

Niugg2010 — Thu, 29 Sep 2016 22:22:19 GMT

Thanks I will try. Actually I used Enterprise Guide to import, and then copy the code to sas to get data set.

rogerjdeangelis — Sun, 02 Oct 2016 00:45:51 GMT

R is integrated with SAS IML so you should be able to use

Niugg2010 — Sun, 02 Oct 2016 21:32:38 GMT

Thanks.