topic Re: PROC SGPLOT scatter and series, connecting dots within group in SAS Programming

PROC SGPLOT scatter and series, connecting dots within group

cmendoza87 — Sun, 17 Jul 2022 16:18:38 GMT

Hello,

I am trying to use proc sgplot with scatter and series to create a plot that shows differences between two time points for each group and would like to be able to connect the dots if possible.

Code:

DATA Change_all2;
INPUT Time $ Group $ Variable2 $ Estimate Lower Upper;
DATALINES;
Baseline Overall eGFR 109.97 109.56 110.38
Baseline No_DS eGFR 109.70 109.18 110.22
Baseline DS eGFR 110.72 110.15 111.29
Baseline DS_Infreq eGFR 111.19 110.54 111.84
Baseline DS_Freq eGFR 109.32 108.32 110.32
Baseline DS_Bot eGFR 111.37 110.50 112.24
Baseline DS_NVNM eGFR 110.81 109.93 111.70
Baseline DS_Vit_Min eGFR 109.80 108.79 110.80
Baseline DS_NonNeph eGFR 110.59 109.99 111.20
Baseline DS_Neph eGFR 111.46 110.38 112.55
Visit2 Overall eGFR 106.58 106.13 107.03
Visit2 No_DS eGFR 105.97 105.38 106.56
Visit2 DS eGFR 107.55 106.88 108.22
Visit2 DS_Infreq eGFR 107.89 107.15 108.64
Visit2 DS_Freq eGFR 107.09 105.70 108.48
Visit2 DS_Bot eGFR 108.23 107.23 109.22
Visit2 DS_NVNM eGFR 107.40 106.27 108.54
Visit2 DS_Vit_Min eGFR 106.47 105.30 107.64
Visit2 DS_NonNeph eGFR 107.30 106.55 108.04
Visit2 DS_Neph eGFR 108.91 107.80 110.02

;

RUN;

PROC SGPLOT DATA=Change_all2;
WHERE Variable2 = "eGFR";
LABEL Estimate = "Age- and Sex-Adjusted ACR and eGFR";
SCATTER Y=Estimate X=Group / GROUP=Time GROUPDISPLAY=CLUSTER YERRORLOWER=Lower YERRORUPPER=Upper JITTER;
SERIES Y=Estimate X=Group / GROUP=Time GROUPDISPLAY=CLUSTER;
XAXIS TYPE=DISCRETE;
TITLE "Baseline to Visit 2 eGFR by Group";
RUN;

Ideally, I would like there to be a line from baseline to visit 2 for each group instead of what is shown above but I am not sure how to make that happen.

Thank you!

Re: PROC SGPLOT scatter and series, connecting dots within group

ballardw — Mon, 18 Jul 2022 01:25:51 GMT

Describe exactly what values of what variables are to be used to connect a baseline to a visit value.

If you say "group" you are very likely to have a result where the connection overwrites your error bars making them very hard to see

Re: PROC SGPLOT scatter and series, connecting dots within group

Ksharp — Mon, 18 Jul 2022 12:42:58 GMT

You want this one ?

DATA Change_all2;
INPUT Time $ Group $ Variable2 $ Estimate Lower Upper;
DATALINES;
Baseline Overall eGFR 109.97 109.56 110.38
Baseline No_DS eGFR 109.70 109.18 110.22
Baseline DS eGFR 110.72 110.15 111.29
Baseline DS_Infreq eGFR 111.19 110.54 111.84
Baseline DS_Freq eGFR 109.32 108.32 110.32
Baseline DS_Bot eGFR 111.37 110.50 112.24
Baseline DS_NVNM eGFR 110.81 109.93 111.70
Baseline DS_Vit_Min eGFR 109.80 108.79 110.80
Baseline DS_NonNeph eGFR 110.59 109.99 111.20
Baseline DS_Neph eGFR 111.46 110.38 112.55
Visit2 Overall eGFR 106.58 106.13 107.03
Visit2 No_DS eGFR 105.97 105.38 106.56
Visit2 DS eGFR 107.55 106.88 108.22
Visit2 DS_Infreq eGFR 107.89 107.15 108.64
Visit2 DS_Freq eGFR 107.09 105.70 108.48
Visit2 DS_Bot eGFR 108.23 107.23 109.22
Visit2 DS_NVNM eGFR 107.40 106.27 108.54
Visit2 DS_Vit_Min eGFR 106.47 105.30 107.64
Visit2 DS_NonNeph eGFR 107.30 106.55 108.04
Visit2 DS_Neph eGFR 108.91 107.80 110.02

;

RUN;

 

PROC SGPLOT DATA=Change_all2 noautolegend;
WHERE Variable2 = "eGFR";
LABEL Estimate = "Age- and Sex-Adjusted ACR and eGFR";
series Y=Estimate X=Group/group=group lineattrs=(color=grey pattern=dash) ;

SCATTER Y=Estimate X=Group / GROUP=Time GROUPDISPLAY=overlay YERRORLOWER=Lower YERRORUPPER=Upper JITTER;
SERIES Y=Estimate X=Group / GROUP=Time GROUPDISPLAY=overlay;
XAXIS TYPE=DISCRETE;
TITLE "Baseline to Visit 2 eGFR by Group";
RUN;

Re: PROC SGPLOT scatter and series, connecting dots within group

cmendoza87 — Mon, 18 Jul 2022 14:53:57 GMT

I would like to connect: 109.97 to 106.58, 109.70 to 105.97, 110.72 to 107.55, 111.19 to 107.89, 109.32 to 107.09, 111.37 to 108.23, 110.81 to 107.40, 109.80 to 106.47, 110.59 to 107.30, 111.46 to 108.91.

Ideally, the points would be slightly jittered so that the error bars could still show but that may not be possible.

Re: PROC SGPLOT scatter and series, connecting dots within group

cmendoza87 — Mon, 18 Jul 2022 15:04:18 GMT

Thank you, I was hoping for it to look something like this, but I think I would need to redo my datalines? Or is there a way to separate each group (i.e. overall, no_DS, etc) into baseline and visit 2?

Thank you so much for your help!

Re: PROC SGPLOT scatter and series, connecting dots within group

Ksharp — Tue, 19 Jul 2022 12:50:24 GMT

OK. As you said, I think you need change your data value .

DATA Change_all2;
INPUT Time $ Group Group2 Variable2 $ Estimate Lower Upper;
DATALINES;
Baseline 1 0.6 eGFR 109.97 109.56 110.38
Baseline 2 1.6 eGFR 109.70 109.18 110.22
Baseline 3 2.6 eGFR 110.72 110.15 111.29
Baseline 4 3.6 eGFR 111.19 110.54 111.84
Baseline 5 4.6 eGFR 109.32 108.32 110.32
Baseline 6 5.6 eGFR 111.37 110.50 112.24
Baseline 7 6.6 eGFR 110.81 109.93 111.70
Baseline 8 7.6 eGFR 109.80 108.79 110.80
Baseline 9 8.6 eGFR 110.59 109.99 111.20
Baseline 10 9.6 eGFR 111.46 110.38 112.55
Visit2 1 1.4 eGFR 106.58 106.13 107.03
Visit2 2 2.4 eGFR 105.97 105.38 106.56
Visit2 3 3.4 eGFR 107.55 106.88 108.22
Visit2 4 4.4 eGFR 107.89 107.15 108.64
Visit2 5 5.4 eGFR 107.09 105.70 108.48
Visit2 6 6.4 eGFR 108.23 107.23 109.22
Visit2 7 7.4 eGFR 107.40 106.27 108.54
Visit2 8 8.4 eGFR 106.47 105.30 107.64
Visit2 9 9.4 eGFR 107.30 106.55 108.04
Visit2 10 10.4 eGFR 108.91 107.80 110.02
;
RUN;

 

PROC SGPLOT DATA=Change_all2 noautolegend;
WHERE Variable2 = "eGFR";
LABEL Estimate = "Age- and Sex-Adjusted ACR and eGFR";
series Y=Estimate X=Group2/group=group lineattrs=(color=gray ) ;

SCATTER Y=Estimate X=Group2 / GROUP=Time YERRORLOWER=Lower YERRORUPPER=Upper JITTER ;
XAXIS   values=(0 to 11 by 1)  fitpolicy=rotate display=(nolabel)
valuesdisplay=(' ' 'Overall' 'No_DS' 'DS' 'DS_Infreq' 
 'DS_Freq' 'DS_Bot' 'DS_NVNM' 'DS_Vit_Min' 'DS_NonNeph' 'DS_Neph' ' ');
TITLE "Baseline to Visit 2 eGFR by Group";
RUN;

Re: PROC SGPLOT scatter and series, connecting dots within group

Ksharp — Tue, 19 Jul 2022 12:52:19 GMT

Re: PROC SGPLOT scatter and series, connecting dots within group

cmendoza87 — Tue, 19 Jul 2022 14:15:19 GMT

Thank you so much, this worked perfectly!