topic Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria in SAS Programming

SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

bej — Mon, 17 Jan 2022 04:51:34 GMT

Hi,

I opened my big mouth and said that I used to work with SAS years and years ago, so here we are at 10:00 on a Saturday night reaching out for help from you guys. Any help you can give will be greatly appreciated.

I have multiple years of patient data that has 28 fields (ID ($2.), DOB (mmddyyyy), DxDate (mmddyyyy), ICD_1, ICD_2, ... ICD_25 ($7.))

The output data that I want is only the ID based on an ICD code of V0171, 0520, or 0522 with an age >= 30.

data have;
input ID DOB DxDate icd_1 icd_2 icd_3 icd_4 icd_5 icd_6 icd_7 icd_8 icd_9 icd_10 icd_11 icd_12 icd_13 icd_14 icd_15 icd_16 icd_17 icd_18 icd_19 icd_20 icd_21 icd_22 icd_23 icd_24 icd_25 $7.;
format DOB mmddyyyy10. DxDate mmddyyyy10.;
age = INT(YRDIF(DOB, DxDate, 'ACTUAL'));

Have I started this off right? How would I proceed from here? Thanks!

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

ChrisNZ — Mon, 17 Jan 2022 09:02:30 GMT

So just a where clause?

where prxmatch('/V0171|V0520|V0522/',catx('|',of ICD_: )) ;

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

ChrisNZ — Mon, 17 Jan 2022 09:36:28 GMT

Complete the clause with the age condition

and yrdif(DOB, today(), 'age') >= 30

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

bej — Tue, 18 Jan 2022 20:06:02 GMT

where prxmatch('/0520|0522|V0171/',catx('|',of icd_: )) ;

Thanks. When I try and run this line, it underlines icd_ and flags it as:

ERROR 22-322: Syntax error, expecting one of the following: !, !!, &, (, ), *, **, +, ',', -, /, <, <=, <>, =, >, >=, ?, AND, BETWEEN, CONTAINS, EQ, GE, GT, IN, IS, LE, LIKE, LT, NE, NOT, NOTIN, OR, ^, ^=, |, ||, ~, ~=.

ERROR 202-322: The option or parameter is not recognized and will be ignored.

Not sure if it matters, but only V0171 has a preceeding V. The others two are just numbers. I get the same results if I use the second where index(catx that you provided, as well. Any advice on why it is doing this?

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

ChrisNZ — Tue, 18 Jan 2022 22:37:35 GMT

Show the log please.

The syntax is correct.

25         data t;
26           ICD_1='XXX0520'; ICD_2='XXX0521';
27           X = prxmatch('/0520|0522|V0171/', catx('|', of ICD_: )) ;
28           put X=;
29         run;

X=4
NOTE: The data set WORK.T has 1 observations and 3 variables.
NOTE: Compressing data set WORK.T increased size by 100.00 percent. 
      Compressed is 2 pages; un-compressed would require 1 pages.
NOTE: DATA statement used (Total process time):
      real time           0.01 seconds
      cpu time            0.01 seconds

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

bej — Thu, 20 Jan 2022 16:07:05 GMT

Sorry, it has been over 12 years since I have messed with SAS, so I want to apologize again for my ignorance, but I am still having issues with your program.

My data looks like this (ID, DOB, Dx_Date and 25 icd_ variables with various data)

ID	DOB	Dx_Date	icd_1	icd_2	icd_3	icd_4	icd_5	... icd_25
1	1/1/1945	2/3/2020	0543	V1111	0545	0546	0520	0548
59	2/2/1955	2/4/2020	0544	0545	0546	V0171	0548	0549
672	3/3/1965	2/5/2020	0545	0546	0548	0548	0549	0550
1055	4/4/1975	2/6/2020	0546	0547	0522	V0999	0550	0551

When I run the code that you provided, I get the following output:

Obs icd_1 icd_2 X age DOB Dx_Date
1 XXX0520 XXX0522 4 0 . .

What I need is to have a new output, just display the IDs of the clients that meet the criteria (the three ICD codes, 0520, 0522, V0171, and >=30). So, using the above data snipet.

Output_A:

1055

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

ChrisNZ — Fri, 21 Jan 2022 06:30:26 GMT

My WHERE clause should do what you ask. Show the log.

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

bej — Fri, 21 Jan 2022 13:48:34 GMT

1          OPTIONS NONOTES NOSTIMER NOSOURCE NOSYNTAXCHECK;
 68         
 69         data work.test;
 70         informat ID DOB dx_date age icd_1 icd_2 icd_3 icd_4 icd_5 icd_6 icd_7 icd_8 icd_9 icd_10 icd_11 icd_12 icd_13 icd_14
 70       ! icd_15 icd_16 icd_17 icd_18 icd_19 icd_20 icd_21 icd_22 icd_23 icd_24 icd_25;
 71         age = INT(YRDIF(DOB, dx_date, 'ACTUAL')) >= 30;
 72         where prxmatch('/0520|0522|V0171/', catx('|', of icd_: )) ;
                                                             ____
                                                             22
                                                             202
 ERROR: Syntax error while parsing WHERE clause.
 ERROR: No input data sets available for WHERE statement.
 ERROR 22-322: Syntax error, expecting one of the following: !, !!, &, (, ), *, **, +, ',', -, /, <, <=, <>, =, >, >=, ?, AND, 
               BETWEEN, CONTAINS, EQ, GE, GT, IN, IS, LE, LIKE, LT, NE, NOT, NOTIN, OR, ^, ^=, |, ||, ~, ~=.  
 
 ERROR 202-322: The option or parameter is not recognized and will be ignored.
 
 73         run;
 
 NOTE: The SAS System stopped processing this step because of errors.
 WARNING: The data set WORK.TEST may be incomplete.  When this step was stopped there were 0 observations and 29 variables.
 WARNING: Data set WORK.TEST was not replaced because this step was stopped.
 NOTE: DATA statement used (Total process time):
       real time           0.00 seconds
       user cpu time       0.00 seconds
       system cpu time     0.01 seconds
       memory              672.03k
       OS Memory           24996.00k
       Timestamp           01/21/2022 01:46:40 PM
       Step Count                        63  Switch Count  0
       Page Faults                       0
       Page Reclaims                     70
       Page Swaps                        0
       Voluntary Context Switches        0
       Involuntary Context Switches      0
       Block Input Operations            0
       Block Output Operations           8

Re: SAS program to ID a cohort based on ICD 9 data keeping only data that meets criteria

ChrisNZ — Fri, 21 Jan 2022 23:18:50 GMT

Read the log.

ERROR: No input data sets available for WHERE statement.

What data are you reading? You need a SET statement if reading a SAS table.

If reading flat data, you need an INPUT statement. In that case, the INPUT statement should come before the filter statement, and WHERE should be replaced with IF.