topic Survival analysis with counting process and multiple time varying covariates in SAS Programming

Survival analysis with counting process and multiple time varying covariates

haoduonge — Thu, 20 May 2021 16:37:37 GMT

Hi All,

Have you ever run the PROC PHREG in which you include more than one time varying covariate using counting process?

I understand that in counting process approach, for each variable (x, y), we need to restructure data into: event, start, stop, and var (x,y)/covariate value.

How can we run a multivariate model including x and y with 2 different data set, and more complicated if we have many more variables?

I really appreciate any help on this.

Thanks so much!

Hao

FU_TIME

Event

…

Re: Survival analysis with counting process and multiple time varying covariates

sbxkoenk — Fri, 21 May 2021 15:33:23 GMT

Hello,

As nobody has answered you until now, I will try to help.

Just a remark first: It would have been better to post this question in the 'Statistical Procedures' board under the 'Analytics' heading. Probably you would have got an earlier answer there. This is just a reminder for your future questions on SAS/STAT procedures. Don't post / duplicate this question again as a new topic in the other board. [It will maybe be moved by someone having this power (the power to move between boards).]

To come back on your question:

Why are you talking about two different data sets?

And what's the problem to have multiple time varying (time dependent) covariates?

To me, your model statement in PROC PHREG can look like this:

/* Counting Process Style of Input */
model (T1,T2) * Status(0) = Treatment X1 X2 X3 X4 Z1 Z2 Z3;

where X1-X4 are fixed explanatory variables and Z1-Z3 are time-dependent covariates.

Why do you think you can only have one Z? Do you experience any problems when using >1 Z-var?

Or do you have a problem aligning Z1, Z2, Z3 (i.e. giving them all three a value for the same at-risk interval (T1,T2] )?

Kind regards,

Koen

Re: Survival analysis with counting process and multiple time varying covariates

haoduonge — Fri, 21 May 2021 15:39:37 GMT

Thanks so much for your reply.

I understand that for Z1-Z3, I need to restructure data, what if I have another set of Y1-Y3 - also time-dependent covariate.

Thanks again!

Hao

Re: Survival analysis with counting process and multiple time varying covariates

sbxkoenk — Fri, 21 May 2021 15:50:13 GMT

Hello,

Why can't you merge both data sets?

You merge keys would be the triple ( ID , T1 , T2 ).

Koen

Re: Survival analysis with counting process and multiple time varying covariates

haoduonge — Fri, 21 May 2021 15:58:14 GMT

I will try that.

Thanks so much!!!

Hao

Re: Survival analysis with counting process and multiple time varying covariates

haoduonge — Fri, 21 May 2021 21:54:24 GMT

Hi,

It worked great for variables with same format z1-z3, y1-y3, thanks so much!

However, I have another variable, also time varying covariate but the format is not z1-z3 y1-y3.

For example, one person took a medication during the FU time, and the time before taking medication is counted as non-exposure time, and event=0, and time after taking med will be counted as exposure and their event =0 or 1, and its T1, T2 are different from those from z1-z3, y1-y3.

Do you have way to cover this example?

Thanks!

Hao

Re: Survival analysis with counting process and multiple time varying covariates

sbxkoenk — Sat, 22 May 2021 12:34:30 GMT

Hello @haoduonge ,

I am not familiar enough with survival analysis to be able to answer the latter question.

I recommend you to <start a new topic> in the 'Statistical Procedures' board under 'Analytics' (and possibly to mark this topic as solved).

For your new topic / question you could use the title:

PHREG Counting Process Style of Input and binary time-varying covariate.

And in the body of your post you can ask what to do if the nature of your time-varying covariates does not allow you to align all values in the (T1,T2] intervals.

Of course you can also consider to use another style of input (and / or another style of model).

Kind regards,

Koen

Re: Survival analysis with counting process and multiple time varying covariates

haoduonge — Sat, 22 May 2021 17:22:19 GMT

Thank you!

Hao