topic Re: Storing the P value and Hazard ratios from multiple Proc PHREG to a Dataset in SAS Programming

Storing the P value and Hazard ratios from multiple Proc PHREG to a Dataset

fikel — Thu, 13 May 2021 13:46:15 GMT

Hello, I have a dataset where my exposure of interest is the level of a particular nutrient and the outcome is cancer. I wanted to find the level of nutrient at which splitting the cohort at that point had the lowest (most significant) p-value. An example of the interpretation of this level would be: people who consume more than 100 units of this nutrient have a 20% lower risk of cancer with a p-value of 0.003.

I created a macro to basically split the cohort at a specific level of the nutrient and run Proc PHREG to give me the hazard ratio's and associated P-values comparing the individuals with intake above the cutpoint to individuals below the cutpoint. I wrote a data step to run this macro at multiple different nutrient levels. I am still very new at SAS and was hoping to find out if there was a way to store the p-values and hazard ratios from the multiple Proc PHREG procedures, so I can use a data step to find the minimum P-value or even plot the p-values by the cutpoints.

Here is the macro:

%macro dichotomize(dsn,var,cutoff,i,dichotvar);
%LET iteration = &i;

		data want&iteration;
		set want_someday;
		
		       if &var =. then &dichotvar = .;
		  else if &var le &cutoff then &dichotvar=0;
		  else if &var gt &cutoff then &dichotvar=1;
		run;
		
		proc phreg data = want&iteration;
		title "Colorectal-cancer incidence attempt";
		
		class &dichotvar (ref="0") menopause_with_males (ref="0") race (ref="1") hhincome (ref="1")
				enrollment_source (ref="C") fh_colorectalcancer (ref="0")
				BMI_category_expanded (ref="0") alcohol_category (ref="0") smokestatus_packyear (ref="0") hei10_category (ref="0")
				; 
		model eof_age_CRC*Inc_CRC(0) = &dichotvar 
				menopause_with_males race hhincome enrollment_source 
				BMI_category_expanded totalactivitymethr smokestatus_packyear Comorbidity_Index 
				ffq_kcal hei10_category alcohol_category fh_colorectalcancer
				/ entry=enrollment_agemonths rl=wald;
		run;	
		
%mend dichotomize;

Re: Storing the P value and Hazard ratios from multiple Proc PHREG to a Dataset

FreelanceReinh — Thu, 13 May 2021 16:56:02 GMT

Hello @fikel,

I would insert this statement before the PROC PHREG step in the macro:

ods output ParameterEstimates=estim&i(where=(parameter="&dichotvar"));

This will create datasets ESTIM1, ESTIM2, ... (for &i=1, 2, ...) containing the parameter estimates, p-values and hazard ratios. (The dataset names "ESTIM1" etc. are user-defined.) The WHERE= dataset option is optional, but may be useful to focus on the parameter whose cutoff is under investigation. You can also add a KEEP= or DROP= dataset option to restrict the datasets to variables of interest.

These ESTIMn datasets can be combined to a single dataset for all iterations (e.g., for one parameter):

data est;
/* insert a suitable LENGTH statement here if warning "Multiple lengths ..." occurs */
set estim: indsname=dsn;
iteration=input(compress(dsn,,'kd'),32.);
run;

Instead of the shortcut estim: in the SET statement you can use a more explicit list of the form estim1-estim99 (which also might improve the sort order). You may want to add a variable CUTOFF to dataset EST (or the individual ESTIMn) in order to bring cutoff and p-values together.

Re: Storing the P value and Hazard ratios from multiple Proc PHREG to a Dataset

fikel — Thu, 13 May 2021 19:50:19 GMT

Thank you so much! This successfully created the dataset. In regard to adding a CUTOFF variable to the EST or ESTIMn, I am having a difficult time getting this added to the ESTIMn data sets. How do I accomplish this?

Re: Storing the P value and Hazard ratios from multiple Proc PHREG to a Dataset

FreelanceReinh — Thu, 13 May 2021 21:02:07 GMT

There are different ways to do this. One is to insert a DATA step into the macro, after the PROC PHREG step:

  data estim&i;
  set estim&i;
  cutoff=&cutoff;
  run;