topic Re: Count conditional on continuous value being above a number in SAS Programming

Count conditional on continuous value being above a number

yelkenli — Fri, 22 Nov 2019 01:14:44 GMT

I have a time series of values (e.g. speed of a car) and I want to understand the number of times that value exceeds a number for certain durations (e.g. "exceeded 55mph for more than 8 seconds" occurred 5 times during this 10 hour trip.

In excel I created a column that started counting when the value was above 55, and then reset to 0 when it fell below again. I created a second column that took the difference of the prior row and current row of that first calculated count column, which gave the highest number in each series plus a bunch of -1 values. Ignoring the -1 and 0 values, I can then get my desired count.

The full data set is too large for excel and i would prefer to run this in SAS, and in a data step, though Proc SQL is good also.

The excel method works, but I am stumped on how to get that first counting column that resets to zero when the continuous variable falls below the threshold. I don't think first. and last. would work, but maybe with an if/then statement? I am not sure how to reset an if/then count.

Assuming the excel method is a good path, how do I get that first counting column?

raw data example

date_time	speed	Count above 55	count above 42
11DEC16:23:53:21	35.00	0	0
11DEC16:23:53:22	39.00	0	0
11DEC16:23:53:23	45.00	0	1
11DEC16:23:53:24	55.00	1	2
11DEC16:23:53:25	56.00	2	3
11DEC16:23:53:26	58.00	3	4
11DEC16:23:53:27	56.00	4	5
11DEC16:23:53:28	55.00	5	6
11DEC16:23:53:29	50.00	0	7
11DEC16:23:53:30	40.00	0	0
11DEC16:23:53:31	53.00	0	1
11DEC16:23:53:32	55.00	1	2
11DEC16:23:53:33	56.00	2	3
11DEC16:23:53:34	58.00	3	4

the final product would look like:

Number of times above55, sustained for xx seconds
xx	counts
1
2
3	1
4
5	1
6
7
8
9
10

Number of times above 42, sustained for xx seconds
xx	counts
1
2
3
4	1
5
6
7	1
8
9
10

Re: Count conditional on continuous value being above a number

jvdl — Fri, 22 Nov 2019 09:14:18 GMT

This solution assumes the time data is continuous, i.e. each record is separated from the next by 1 second only.

You can use the retain statement to get the incremental counts of speeds above (and, apparently, also equal) to 42 and 55.

data have;
	input date_time speed;
	informat date_time datetime16.;
	format date_time datetime16.;
	cards;
11DEC16:23:53:21 35.00
11DEC16:23:53:22 39.00
11DEC16:23:53:23 45.00
11DEC16:23:53:24 55.00
11DEC16:23:53:25 56.00
11DEC16:23:53:26 58.00
11DEC16:23:53:27 56.00
11DEC16:23:53:28 55.00
11DEC16:23:53:29 50.00
11DEC16:23:53:30 40.00
11DEC16:23:53:31 53.00
11DEC16:23:53:32 55.00
11DEC16:23:53:33 56.00
11DEC16:23:53:34 58.00
;
run;

proc sort data=have out=have_sorted;
	by date_time;
run;

data want;
	set have_sorted;
	by date_time;

	retain above_42 above_55;

	if speed >= 42 then do;
		above_42 + 1;

		if speed >= 55 then above_55 + 1;
		else above_55 = 0;
	end;
	else above_42 = 0;

	if missing(above_42) then above_42 = 0;
	if missing(above_55) then above_55 = 0;
run;

And if you wanted the final counts for each number of sustained seconds:

/* Group runs for sustained counts  */
data groupings;
	set want;
	by date_time;

	retain group_42 group_55;
	if _n_ = 1 then do;
		group_42 = 1;
		group_55 = 1;
	end;
	else do;
		if above_42 = 0 then group_42 + 1;
		if above_55 = 0 then group_55 + 1;
	end;
run;

proc sql noprint;
	create table sustained_42 as
		select distinct seconds, count(distinct group_42) as count_42
		from (select distinct max(above_42) as seconds, group_42
			  from groupings
			  where above_42 ^= 0
			  group by group_42)
		group by seconds
		order by seconds
	;
	create table sustained_55 as
		select distinct seconds, count(distinct group_55) as count_55
		from (select distinct max(above_55) as seconds, group_55
			  from groupings
			  where above_55 ^= 0
			  group by group_55)
		group by seconds
		order by seconds
	;
quit;

data perfect;
	do seconds = 1 to 10;
		output;
	end;
run;

data want_final;
	merge perfect sustained_42 sustained_55;
	by seconds;

	array counts count_42 count_55;
	do over counts;
		if missing(counts) then counts = 0;
	end;
run;

Re: Count conditional on continuous value being above a number

PGStats — Fri, 22 Nov 2019 18:20:32 GMT

I would propose to start with:

data speed;
input dt :datetime. speed;
format dt datetime.;
datalines;
11DEC16:23:53:21             35.00
11DEC16:23:53:22             39.00
11DEC16:23:53:23             45.00
11DEC16:23:53:24             55.00
11DEC16:23:53:25             56.00
11DEC16:23:53:26             58.00
11DEC16:23:53:27             56.00
11DEC16:23:53:28             55.00
11DEC16:23:53:29             50.00
11DEC16:23:53:30             40.00
11DEC16:23:53:31             53.00
11DEC16:23:53:32             55.00
11DEC16:23:53:33             56.00
11DEC16:23:53:34             58.00
;

data want;
array above{2} _temporary_ (42, 55);
array start{2} _temporary_;
array stop{2} _temporary_;
set speed end=done;
do i = 1 to dim(above);
	limit = above{i};
	begin = start{i};
	end = stop{i};
	if start{i} then do;
		if speed < above{i} then do;
			output;
			call missing(start{i});
			end;
		else if done then do;
			end = dt;
			output;
			end;
		end;
	else if speed >= above{i} then start{i} = dt;
	stop{i} = dt;
	end;
format begin end datetime.;
keep limit begin end;
run;
	
proc print data=want noobs; run;

limit 	begin 	end
55 	11DEC16:23:53:24 	11DEC16:23:53:28
42 	11DEC16:23:53:23 	11DEC16:23:53:29
42 	11DEC16:23:53:31 	11DEC16:23:53:34
55 	11DEC16:23:53:32 	11DEC16:23:53:34

From there, it's only a matter of summing and counting.

Re: Count conditional on continuous value being above a number

yelkenli — Fri, 22 Nov 2019 19:50:08 GMT

The first part works great. I changed the if-then-else block however to this construct:

above_42 = ifn(speed>= 15, above_42 + 1,0);
above_55 = ifn(speed>= 40, above_55 + 1,0);

what is the purpose of "if missing(above_42) then above_42=0;

I would have expected this to be 'if missing the speed variable, then set the counter = 0'.

everything else is the same. Thanks!

Re: Count conditional on continuous value being above a number

jvdl — Sat, 23 Nov 2019 16:13:53 GMT

if missing(above_42) then above_42=0;

This just rewrites initial missings (before the counters actually kick in) to zero. If your solution works, and plays well with the second block of code I posted, then stick with that.