topic Re: how to capture transitions of patient visits in SAS Programming

how to capture transitions of patient visits

Bobo3 — Sat, 19 Oct 2019 06:20:43 GMT

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I would like to find out the hospital transitions of each patient during year 2018. The claims data look like below

(1) The data I have looks like:

PatID FacID clm_from_dt clm_thru_dt
001 40001 1/3/2018 1/6/2018
001 40001 1/14/2018 1/19/2018
001 40001 3/7/2018 3/10/2018

The data I want looks like (need to insert rows to make up the date gap between two claims in order to capture the transition):

PatID FacID clm_from_dt clm_thru_dt
001 40001 1/3/2018 1/6/2018
001 1/6/2018 1/14/2018
001 40001 1/14/2018 1/19/2018
001 1/19/2018 3/7/2018
001 40001 3/7/2018 3/10/2018
001 3/10/2018 12/31/2018

(2) For some patients, they visited hospital multiple times during their stay in a long term care facility. So there is overlapping between the previous claim through date and next claim from date. The data looks like below:
PatID FacID clm_from_dt clm_thru_dt
002 43517 2/1/2018 3/31/2018
002 40002 2/10/2018 2/11/2018
002 42168 2/12/2018 2/22/2018
002 43517 4/1/2018 5/31/2018
002 40002 4/5/2018 4/7/2018
002 43517 6/1/2018 7/31/2018

For this situation, I would like the data looks like below:
PatID FacID clm_from_dt clm_thru_dt
002 43517 2/1/2018 2/10/2018
002 40002 2/10/2018 2/11/2018
002 42168 2/12/2018 2/22/2018
002 43517 2/22/2018 3/31/2018
002 43517 4/1/2018 4/5/2018
002 40002 4/5/2018 4/7/2018
002 43517 4/7/2018 5/31/2018
002 43517 6/1/2018 7/31/2018
002 7/31/2018 12/31/2018

In general, I would like to insert rows to make sure there is no date gap between claims.

Re: how to capture transitions of patient visits

ed_sas_member — Sat, 19 Oct 2019 12:35:56 GMT

Hi @Bobo3

I don't understand why do you still expect overlapping dates in your output table:

e.g. for patient 001:

001 40001 1/3/2018 1/6/2018
001 1/6/2018 1/14/2018 -> why don't you expect 1/7/2018 and 1/13/2018 ?
001 40001 1/14/2018 1/19/2018
001 1/19/2018 3/7/2018 -> why don't you expect 1/20/2018 and 3/6/2018 ?
001 40001 3/7/2018 3/10/2018
001 3/10/2018 12/31/2018 -> why don't you expect 3/11/2018 and 12/31/2018 ?

If this is a mistake, you could try the following program. When FacID is missing, it corresponds to date ranges without hospitalisations.

Hope this help.

data have;
	input PatID $ FacID $ clm_from_dt:mmddyy8. clm_thru_dt:mmddyy8.;
	format clm_from_dt clm_thru_dt date9.;
	cards;
001 40001 1/3/2018 1/6/2018
001 40001 1/14/2018 1/19/2018
001 40001 3/7/2018 3/10/2018
002 43517 2/1/2018 3/31/2018
002 40002 2/10/2018 2/11/2018
002 42168 2/12/2018 2/22/2018
002 43517 4/1/2018 5/31/2018
002 40002 4/5/2018 4/7/2018
002 43517 6/1/2018 7/31/2018
;
run;

/* STEP1 : creation of 1 dataset with 1 row per day of hospitalization */ 

data day_hosp;
	set have;
	
	/* Each hospital transition is identified by the variable source */
	source + 1;
	
	/* 1 row per day at hospital */

	format day date9.;
	day=clm_from_dt - 1;
	
	do i=clm_from_dt to clm_thru_dt;
		day + 1;
		output;
	end;
	drop i clm_from_dt clm_thru_dt;
	
run;

proc sort data=day_hosp;
	by patID day;
run;

data day_hosp2;
	set day_hosp;
	by patID day source;

	/* remove overlapping days*/
	
	if last.day then
		output;
run;

/* STEP2 : creation of a dataset with 1 row per day until 12/31/2018 */ 

proc sql;
	create table day_all as select patID, min(clm_from_dt) as start_date 
		format=date9., '31DEC2018'd as end_date format=date9.
	from have group by patID order by patID;
quit;

data day_all2;
	set day_all;
	format day date9.;
	by patID;

	do day=(start_date) to (end_date);
		day+1;
		day=day-1;
		output;
	end;
	drop start_date end_date;
run;

/* STEP3 : merge */

data day_all;
	format day date9.;
	merge day_hosp2 day_all2;
	by patID day;
run;

data want;
	set day_all;
	format clm_from_dt clm_thru_dt date9.;
	by patID source notsorted;
	retain clm_from_dt;

	if first.source then
		clm_from_dt=day;

	if last.source then
		clm_thru_dt=day;

	if last.source then
		output;
	keep PatID FacID clm_from_dt clm_thru_dt;
run;


proc print data=want;
	id patID;
run;

Re: how to capture transitions of patient visits

PGStats — Sun, 20 Oct 2019 05:21:32 GMT

To eliminate overlaps and fill in the gaps (if that's what you want) :

data have;
input PatID $ FacID $ clm_from_dt :mmddyy. clm_thru_dt :mmddyy.;
format clm: yymmdd10.;
datalines;
002 43517 2/1/2018 3/31/2018
002 40002 2/10/2018 2/11/2018
002 42168 2/12/2018 2/22/2018
002 43517 4/1/2018 5/31/2018
002 40002 4/5/2018 4/7/2018
002 43517 6/1/2018 7/31/2018
;

data want;
array f {%sysevalf("31dec2017"d, integer) : %sysevalf("01jan2019"d,integer) } $8;
f{lbound(f)} = "xxxx";
f{hbound(f)} = "xxxx";
do until(last.patId);
	set have; by patId;
	do d = clm_from_dt to clm_thru_dt;
		f{d} = FacId;
		end;
	end;
do d = "01jan2018"d to "31dec2018"d;
	if f{d} ne f{d-1} then do; 
		facId = f{d};
		clm_from_dt = d;
		end;
	if f{d} ne f{d+1} then do;
		clm_thru_dt = d;
		output;
		end;
	end;
keep patId facId clm_from_dt clm_thru_dt; 
run;
		
proc print; run;

Obs. 	PatID 	FacID 	clm_from_dt 	clm_thru_dt
1 	002 	  	2018-01-01 	2018-01-31
2 	002 	43517 	2018-02-01 	2018-02-09
3 	002 	40002 	2018-02-10 	2018-02-11
4 	002 	42168 	2018-02-12 	2018-02-22
5 	002 	43517 	2018-02-23 	2018-04-04
6 	002 	40002 	2018-04-05 	2018-04-07
7 	002 	43517 	2018-04-08 	2018-07-31
8 	002 	  	2018-08-01 	2018-12-31