LASSO and Conditional logistic regression

Mofareh — Fri, 13 Dec 2024 18:19:05 GMT

Hi all, I need dataset to apply the LASSO and conditional logistic regression . if there is SAS program with the codes LASSO-CLR that will be awesome. for education purpose. I will be using this method and would appreciate the help.

I looked for sample data but did not find any..

Thank you,

Re: LASSO and Conditional logistic regression

Ksharp — Sat, 14 Dec 2024 07:54:09 GMT

I think you can not integrate LASSO and CLR into one model. since LASSO is a variable pick-up method and is suited for GLM , while CLR is more like a Mixed model .
But you can run them separatedly:
For LASSO check PROC HPGENSELECT
For CLR check PROC LOGISTIC or PROC GLIMMIX .
Anywary maybe @StatDave or @SteveDenham maybe know something.

Re: LASSO and Conditional logistic regression

Mofareh — Sat, 14 Dec 2024 23:21:44 GMT

Thank you for your response, I appreciate the info. Still looking for dataset to apply these methods.

Thank you

Re: LASSO and Conditional logistic regression

Ksharp — Sun, 15 Dec 2024 02:58:54 GMT

Hi,

Maybe I found a workaround way to do this.

Suppose you have data set:

data Data1;
call streaminit(123);
do ID=1 to 63;
do Outcome = 1 to 0 by -1;
input Gall Hyper @@;
x1=rand('normal');
x2=rand('lognormal');
x3=rand('exponent',0.2);
x4=rand('gamma',1,2);
x5=rand('integer',1,200);
x6=rand('normal',1,2);
x7=rand('normal',2,3);
x8=rand('normal',3,4);
x9=rand('normal',4,5);
x10=rand('normal',5,6);
output;
end;
end;
datalines;
0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1
0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 1
0 1 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0
0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0
0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 1 1
0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 1 0 1 0 0
0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0
0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1
0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0
0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0
1 0 1 0 0 1 0 0 1 0 0 0
;

1) Get the design matrix with RANDOM effect by PROC GLIMMIX:

https://blogs.sas.com/content/iml/2016/02/24/create-a-design-matrix-in-sas.html


proc glimmix data=Data1 outdesign(names )=MixedDesign nofit;
class Gall Hyper;
model outcome(event='1')=Gall Hyper x1-x10/dist=binary;
random ID;
ods select ColumnNames;
run;

2) Perform LASSO method via PROC HPGENSELECT:

Any variable name start with "_X" and "_Z" is from Design Matrix .

Any variable name start with "_X" is fixed effect.

Any variable name start with "_Z" is random effect.


proc hpgenselect data=MixedDesign;
model outcome(event='1') = _x: _z:/ dist=binary;
selection method=Lasso(choose=SBC) details=all;
performance details;
run;

_X10 _X14 _X11 _X12 _X2 _X6 _X9 _X4 entered model.

NOTE: if any one ofvariables(_X2 _X3 _X4 _X5 are from category variable Gall and Hyper ) entered model ,you need include these category variables in model.

_X10 _X14 _X11 _X12 _X2 _X6 _X9 _X4

correspond to variables:

Gall Hyper x5 x9 x6 x7 x1 x4

So include these variables in next proc logistic.

3)Perform Condition Logistic Regression via PROC LOGISTIC.


proc logistic data=Data1;
strata ID;
class Gall Hyper;
model outcome(event='1')=Gall Hyper x5 x9 x6 x7  x1 x4 ;
run;

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LASSO and Conditional logistic regression

Re: LASSO and Conditional logistic regression

Re: LASSO and Conditional logistic regression

Re: LASSO and Conditional logistic regression