topic Problem with genmod macro in New SAS User

Problem with genmod macro

Stanley3 — Fri, 24 May 2024 22:34:14 GMT

Hi,

I am running the following macro

%macro geomeans (data=, outcome=);

	%let total_vars = %sysfunc (countw (&outcome) );
	%do i = 1 %to &total_vars;
		%let selected_var=%scan (&outcome, &i);

               ods output estimates=geomeans&i; 
			proc genmod data=&data;
				class brinda15 / param = glm;
     			model &outcome = brinda15 / type3 dist=normal ;
						estimate "Overall estimate &outcome brinda15 =0" intercept 1 brinda15 1 0  /exp; 
						estimate "Overall estimate &outcome brinda15 =1 " intercept 1 brinda15 0 1  /exp; 
			run;
		ods output close;

I call the macro with the following code:

%geomeans (data=db, outcome=var1 var2 var3)

It works only for the first variable (it doesn't matter which one it is), but for the other variables I the error message below

In case it matters, my outcomes are continuous and ln transformed.

Any tips of how to fix this are welcome!

Thank you

Re: Problem with genmod macro

Astounding — Fri, 24 May 2024 23:17:24 GMT

Based on extensive macro language experience, but zero genmod experience:

It is unusual to create the macro variable &SELECTED_VAR but then never use it. Is it possible that your MODEL statement is supposed to refer to &SELECTED_VAR, not &OUTCOME?

The same could easily apply to the ESTIMATE statements as well (although that appears to be a label and wouldn't cause an error, just a labeling issue).,

Re: Problem with genmod macro

ballardw — Sat, 25 May 2024 04:04:28 GMT

Since your macro code is incomplete (missing and %end; and %mend; at the very least) we can't test your code.

Set

options mprint;

before running the macro. The LOG will show much more detail of the generated code.

Agree you have the wrong variable on the model statement.

Re: Problem with genmod macro

Quentin — Sat, 25 May 2024 18:20:20 GMT

@Astounding already gave the correct answer. This is a nice example of why @ballardw's point of turning on the MPRINT option is critical to understanding errors that are generated by a macro. There is nothing worse than having MPRINT turned off, and having an error in your log, and no idea what code is causing the error. I think MPRINT should always be turned on. I know some people like to turn off MPRINT (and even NOTES) sometimes in production code that they "know" works and this saves them from having a big log file, or speeds up the code some tiny amount because it doesn't have to write a big log file. I was the taught that the value of having a useful log file far outweighs any benefits that come from having a small log file.

In this case, when you turn on MPRINT, you should see that your code is generating a MODEL statement like:

model ln_bmi_medians ln_waist_median_cm ln_waist_hip_median = brinda15 / type3 dist=normal ;

And that makes clear that you intended to have only one dependent variable on the MODEL statement, but have accidentally listed all three.

Re: Problem with genmod macro

Stanley3 — Sat, 25 May 2024 22:27:06 GMT

Thank you so much! I was not aware of the mprint option. I'll make sure to turn it on from now on.

Re: Problem with genmod macro

Stanley3 — Sun, 26 May 2024 01:36:06 GMT

thank you! that solved it. Now it's doing the cycle for all. my outcome variables. However, it is not working for a piece of my code below (which I omitted in the original question for simplicity). Using the mprint option, I can see that the macro-generated code does not seem to recognize &selected_var. I wonder if you know what could be wrong.

%macro geomeans (data=, outcome=);

%let total_vars = %sysfunc (countw (&outcome) );
%do i = 1 %to &total_vars;
%let selected_var=%scan (&outcome, &i);

        ods output estimates=geomeans&i; 
proc genmod data=&data;
class brinda15 / param = glm;
      model &selected_var = brinda15 / type3 dist=normal ;
estimate "Overall estimate &selected_var brinda15 =0" intercept 1 brinda15 1 0  /exp; 
estimate "Overall estimate &selected_var brinda15 =1" intercept 1 brinda15 0 1  /exp; 
by rural;
run;
ods output close;

data geomeans&i; set geomeans&i; 
variable='&selected_var'; 
lower=LBetaEstimate - stderr;                                                                                                                 
upper=LBetaEstimate + stderr;
if rural=0 then setting='urban'; else if rural=1 then setting='rural';
if (label='Exp(Overall estimate &selected_var brinda15 =0)') then iron_def=0; 
else if (label='Exp(Overall estimate &selected_var brinda15 =1)') then iron_def=1;
if iron_def=. then delete;
if iron_def=0 then iron_status='serum ferritin  ≥15 µg'; 
else if iron_def=1 then iron_status='serum ferritin <15 µg';
keep label iron_def variable LBetaEstimate StdErr lower upper rural iron_status setting;
run;

quit;
    %end;

%mend;

Log

Re: Problem with genmod macro

Stanley3 — Sun, 26 May 2024 01:36:56 GMT

Thank you, this is life-changing!!

Re: Problem with genmod macro

Quentin — Sun, 26 May 2024 02:36:50 GMT

Macro variables will not resolve inside of single quotes. So change:

variable='&selected_var';

to:

variable="&selected_var";

and be sure to do the same for the quoted strings on your IF statements as well.

Re: Problem with genmod macro

Stanley3 — Sun, 26 May 2024 02:52:44 GMT

Thank you so much!! It runs great now